View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_2 (Length: 724)

Name: NF5811_low_2
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_2
NF5811_low_2
[»] chr1 (1 HSPs)
chr1 (19-709)||(7665059-7665750)
[»] chr6 (1 HSPs)
chr6 (122-191)||(10995617-10995686)


Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 19 - 709
Target Start/End: Complemental strand, 7665750 - 7665059
Alignment:
Q  19 ctttgcaagttcagctttcaattgcttcagaaatgagttctcaactgatgaccacgataatgccatgactctggaaagagcatcagcagccacattctcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665750 ctttgcaagttcagctttcaattgcttcagaaatgagttctcaactgatgaccacgataatgccatgactctggaaagagcatcagcagccacattctcc 7665651  T
Q  119 -ttccctggcttgtactcaatatgaaaatcagaaccaatgaacttatgcaaccaagcttgttgctttggagtttataaggattgatccaacaggcttttt 217  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665650 cttccctggcttgtactcaatatgaaaatcataaccaatgaacttatgcaaccaagcttgttgctttggagtttataaggattgatccaacaggcttttt 7665551  T
Q  218 aaactcttctgatccgttcttattataaatttgtggcctagcaaatatttgcgaaatttttctaaggatacagttatagcatagaaatatctaatataag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| | |||||||||||||||| |||||||||||||    
T  7665550 aaactcttctgatccgttcttattataaatttgtggcctagcaaatagtggcgaaattttgctaaggctgcagttatagcatagaactatctaatataag 7665451  T
Q  318 taaactggagttgcattctaggttccatctttatagaaaagaatattagagtgtgacccccttgactcaacaccacccccacaccagtccccgaggcatc 417  Q
     | |||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665450 cagactggagttgcattctaggtaccatctttatagaaaagaatgttatagggtgacccccttgactcaacaccacccccacaccagtccccgaggcatc 7665351  T
Q  418 tgtttctaacacgaatggtagtgaaaaatcaggaagattaagtacaggggttgtagttaagacttaagacatgcttcaatttaacaaaagttgtttgagc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||    
T  7665350 tgtttctaacacgaatggtagtgaaaaatcaggaagattaagtacaggggttgtagttaagacttaggacctgcttcaatttatcaaaagctgtttgagc 7665251  T
Q  518 atcttcagtccatgcaaatgcctctttcttcaatagactagtcaatagaagagaatgatgaaatcacaacatattgcacaccactatttgattcttctct 617  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665250 atcttcagtccatgcaaatgcctctttcttcaatagattagtcaatagaagagaatgatgaaatcacaacatattgcacaccactatttgattcttctct 7665151  T
Q  618 ttcctcatataccccttactttctcacaaagtggtcccactttgggtaaattttcttcaaacggttactcacccacccttctctcaatgtgc 709  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7665150 ttcctcatataccccttactttctcacaaagtggtcccaccttgggtaaattttcttcaaacggttactcacccacccttctctcaatgtgc 7665059  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 10995686 - 10995617
Alignment:
Q  122 cctggcttgtactcaatatgaaaatcagaaccaatgaacttatgcaaccaagcttgttgctttggagttt 191  Q
    ||||||||||| ||||||||||||||| | ||||| ||||| || ||||| |||||||| | ||||||||    
T  10995686 cctggcttgtattcaatatgaaaatcaaagccaataaacttgtgtaaccatgcttgttgttctggagttt 10995617  T

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