View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_20 (Length: 422)
Name: NF5811_low_20
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 45251630 - 45251225
Alignment:
| Q |
20 |
tctcttacggatgagccgttgacatggccttgtacttggaatctttggtataaccaactatagggagaagaaaatgacactaaaaaagccgtcccttgaa |
119 |
Q |
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| T |
45251630 |
tctcttatgaatgagccgttggcatggcctcgtacttggaatcttag-tataaccaactatagggagaagaaaatggcactaaaaaagccatcccttgaa |
45251532 |
T |
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| Q |
120 |
gatgacttgcattgcttttgcaacttctcctaaaacaagccttccaccttaaaaaatgatagtagtttcaagatttttcatctagagatgataggaagta |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45251531 |
gatgacttacattgcttttgcaacttctcctaaaacaagccttccaccttaaaaaatgatagtagtttcaagatttttcatctagagatgataggaagta |
45251432 |
T |
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| Q |
220 |
acaagaaacacacactacatttgtggatagttcttccccgttcaatacatgtannnnnnnctttctttcttatatttaacattgaggtcgtaaaaagatt |
319 |
Q |
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| T |
45251431 |
acaagaagcacacactacatttgtggatagttcttccccgttcaatacatgtatttttttctt--cttcttatatttaacattgaggttgtaaaaagatt |
45251334 |
T |
|
| Q |
320 |
accgaaga-----------------gacttgtgtaggaatcttattagaaatttcatatgaattctttttagagatttcgtatgacgcaattcatttgtg |
402 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45251333 |
accgaagagatacatgtttttacatgacttgtgtaggaatcttattag-aatttcatatgaattctttttagagattacgtatgacgcaattcatttgtg |
45251235 |
T |
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| Q |
403 |
ttgatctctg |
412 |
Q |
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| T |
45251234 |
ttgatctctg |
45251225 |
T |
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