View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_23 (Length: 404)
Name: NF5811_low_23
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_23 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 10378961 - 10378558
Alignment:
| Q |
1 |
cttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaacacattccttagtgtag |
100 |
Q |
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| T |
10378961 |
cttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaacacattccttagtgtag |
10378862 |
T |
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| Q |
101 |
ttgattttggatggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttcttacaatttgg |
200 |
Q |
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| T |
10378861 |
ttgattttggatggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttcttacaatttgg |
10378762 |
T |
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| Q |
201 |
gtcaaaaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactc |
300 |
Q |
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| T |
10378761 |
gtcaaaaatcagtttttgagtctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactc |
10378662 |
T |
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| Q |
301 |
ccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgtggcataagtgtacgcatggaggcatttccatcctttcatc |
400 |
Q |
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| T |
10378661 |
ccagagtgctttgcaggctttccggaacccttcgttagtttcattttctctttgaaatgtggcataagtgtacgcatggaggcatttccatcctttcatc |
10378562 |
T |
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| Q |
401 |
tcat |
404 |
Q |
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|||| |
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| T |
10378561 |
tcat |
10378558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10367436 - 10367337
Alignment:
| Q |
1 |
cttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaacacattccttagtgtag |
100 |
Q |
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| T |
10367436 |
cttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattcctttgtgtag |
10367337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 112 - 357
Target Start/End: Complemental strand, 31329456 - 31329213
Alignment:
| Q |
112 |
tggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatca |
211 |
Q |
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| T |
31329456 |
tggttcagttgt--atggcttagctgcttgtggtagtatttttcatgaatatcgaggat-ttttttgggttgtttttcttgcaacttgggtcaaaattcg |
31329360 |
T |
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| Q |
212 |
gtttttgag---tctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtg |
308 |
Q |
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| T |
31329359 |
gtttttgagaggtct-agttatttggatttgtgttggctctggaattttccattaagtaccattggcggcatcttagggtggag-gggactcctggagtg |
31329262 |
T |
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| Q |
309 |
ctttgcaggctttccggaacccttcgttagtttcattttctctttgaaa |
357 |
Q |
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| T |
31329261 |
ctttgcaggctttcgggaacccttcgttagttccattttctcttcgaaa |
31329213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 112 - 357
Target Start/End: Complemental strand, 31336177 - 31335934
Alignment:
| Q |
112 |
tggttcagttgttgatggcttggctgcttgtggtggcatttttcgtgattatcgaggatcttttttgggttgtttttcttacaatttgggtcaaaaatca |
211 |
Q |
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|||||||||||| ||||||| |||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||| ||| ||||||||||| || |
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| T |
31336177 |
tggttcagttgt--atggcttagctgcttgtggtagtatttttcatgaatatcgaggat-ttttttgggttgtttttcttgcaacttgggtcaaaattcg |
31336081 |
T |
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| Q |
212 |
gtttttgag---tctgagttatttggctttgtgttggttctggaatttgccattcaacaccatctgcgtcatcttttggtggagagggactcccagagtg |
308 |
Q |
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||||||||| ||| |||||||||| |||||||||| |||||||||| ||||| | ||||| ||| |||||| ||||||| |||||||| ||||| |
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| T |
31336080 |
gtttttgagaggtct-agttatttggatttgtgttggctctggaattttccattaagtaccattggcggcatcttagggtggag-gggactcctggagtg |
31335983 |
T |
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| Q |
309 |
ctttgcaggctttccggaacccttcgttagtttcattttctctttgaaa |
357 |
Q |
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| T |
31335982 |
ctttgcaggctttcgggaacccttcgttagttccattttctcttcgaaa |
31335934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 31326664 - 31326623
Alignment:
| Q |
363 |
cataagtgtacgcatggaggcatttccatcctttcatctcat |
404 |
Q |
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| T |
31326664 |
cataattgtacgcatggaggcatttccatcatttcatctcat |
31326623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 43657625 - 43657570
Alignment:
| Q |
28 |
caaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaa |
83 |
Q |
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| T |
43657625 |
caaacacatttcaagaataccatcgggaagaagaaagatttcggactttacttcaa |
43657570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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