View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_25 (Length: 388)
Name: NF5811_low_25
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 32033997 - 32034355
Alignment:
| Q |
19 |
aatagtcaatcggattttgattcgctcattctctgnnnnnnnnn--atatcacatttatgtacgaagaagtgcagccaagtgtagagataaatactaaac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
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| T |
32033997 |
aatagtcaatcggattttgattcgctcattctctgtttttttttttatatcacatttatgtacgaagaaatgcagccaagtgttgagacaaatactaaac |
32034096 |
T |
|
| Q |
117 |
ttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatg |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32034097 |
ttagcgatgtgaaaggtgtagacgaggcaaaagctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatg |
32034196 |
T |
|
| Q |
217 |
cctctctagcatgaaatagttatttgatttacatgtttcctaagctattccaatctcgttgattacttatttgataccacaagaagttttcttattcttt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32034197 |
cctctctagcatgaaatagttatttgatttacatgtttcctaagctattccaatctcgttgattaattatttgataccacaagaagttttcttattcttt |
32034296 |
T |
|
| Q |
317 |
gggcgttgatatgttgatacaaagttattaaatagtgatcattcttttgttgacgagaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32034297 |
gggcgttgatatgttgatacaaagttattaaatagtgatcattcttttgttgacgagaa |
32034355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 63 - 375
Target Start/End: Original strand, 31791632 - 31791943
Alignment:
| Q |
63 |
atatcacatttatgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaaga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |
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|
| T |
31791632 |
atatcacatttatgtacgaagaagtgcagccaagtgtagagactaatactaaacttagcgacgtgaaaggtgtagacatgccaaaggctgaacttgaaga |
31791731 |
T |
|
| Q |
163 |
aattgttgattacctaaaagatcctaaggttgaattttccagcattaatctatgcctctctagcatgaaatagttatttgatttacatgtttcctaagct |
262 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| | ||||||||| |
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|
| T |
31791732 |
aattgttgattacctaaaagatcccgaggtagaattttccagcattaattcatg-ttctctagcatggaatagttatttgatttacatttgtcctaagct |
31791830 |
T |
|
| Q |
263 |
attccaatctcgttgattacttatttgataccacaagaagttttcttattctttgggcgttgatatgttgatacaaagttattaaatagtgatcattctt |
362 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
31791831 |
attccaatctcgttgcttacttatatgataccccaagaagttttattattcttcgggcgttgatatgttgacacaaatttattaaatagtgatcattctt |
31791930 |
T |
|
| Q |
363 |
ttgttgacgagaa |
375 |
Q |
| |
|
||||||||||||| |
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|
| T |
31791931 |
ttgttgacgagaa |
31791943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 71 - 375
Target Start/End: Original strand, 32023590 - 32023914
Alignment:
| Q |
71 |
tttatgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttg |
170 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||| || |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
32023590 |
tttatgtacaaagaagtgcagcccagtctagagacaagtactaaacttagcgatatgaaaggtgtaggcgaggcaaaggctgaacttgaagaaattgttg |
32023689 |
T |
|
| Q |
171 |
attacctaaaagatcctaaggttgaattttccagcattaatctatgc--------------------ctctctagcatgaaatagttatttgatttacat |
250 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
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|
| T |
32023690 |
attacctaaaagatcctaaggtagacttttccagcattaatccatgctctcttgcaagcatttctcgcactctagcatgaaatagttatttgatttacat |
32023789 |
T |
|
| Q |
251 |
gtttcctaagctattccaatctcgttgattacttatttgataccacaagaagttttcttattctttgggcgttgatatgttgatacaaagttattaaata |
350 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
32023790 |
gtgtcctaagctattccaatctcgttgattacttatttgataccacgagaagttttattattctttgggcgtgtatatgttgatacaaagttattaaaca |
32023889 |
T |
|
| Q |
351 |
gtgatcattcttttgttgacgagaa |
375 |
Q |
| |
|
||||||||| ||||||||| ||||| |
|
|
| T |
32023890 |
gtgatcattattttgttgatgagaa |
32023914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 74 - 375
Target Start/End: Original strand, 32012044 - 32012365
Alignment:
| Q |
74 |
atgtacgaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgatt |
173 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
32012044 |
atgtacgaagaactgcagcccagtgtagagacaaatactaaatttagcgatgtgaaaggtgtagatgaggcgaaggctgaacttgaagaaattgttgatt |
32012143 |
T |
|
| Q |
174 |
acctaaaagatcctaaggttgaattttccagcattaatctatgc-ctct---------------------ctagcatgaaatagttatttgatttacatg |
251 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
32012144 |
acctaaaagatcctaaggtagacttttccagcattaatccatgctctctctttcttgcagttctcgcactctagcatgaaatagttatttgatttacatg |
32012243 |
T |
|
| Q |
252 |
tttcctaagctattccaatctcgttgattacttatttgataccacaagaagttttcttattctttgggcgttgatatgttgatacaaagttattaaatag |
351 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
32012244 |
tgtcctaagctattccaatctcgttgattacttatttgatgccacgagaagttttattattctttgggcgtggatatgttgatccaaagtta-taaatag |
32012342 |
T |
|
| Q |
352 |
tgatcattcttttgttgacgagaa |
375 |
Q |
| |
|
| |||||| |||||||||||||| |
|
|
| T |
32012343 |
tattcattc-tttgttgacgagaa |
32012365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 48113909 - 48113797
Alignment:
| Q |
80 |
gaagaagtgcagccaagtgtagagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaa |
179 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
48113909 |
gaagaagtgcagcccagtgtagagaccagtactaaatttagtgatgtgaaaggtgtagatgaggcaaaggcggaacttgaagaaattgttcattacctaa |
48113810 |
T |
|
| Q |
180 |
aagatcctaaggt |
192 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48113809 |
gagatcctaaggt |
48113797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 48134008 - 48133917
Alignment:
| Q |
101 |
gagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggt |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
48134008 |
gagacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaaagctgatcttgaagaaattgttcattacctaagagatcctaaggt |
48133917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 362
Target Start/End: Original strand, 48140723 - 48140994
Alignment:
| Q |
112 |
taaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaat |
211 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||| |||||||||||||||||| ||| |||||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
48140723 |
taaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaacttgaagaaattgttcatttcctaaaagatcccgaggttgacttttctggcataaat |
48140822 |
T |
|
| Q |
212 |
ctat-gcctctct---------------------agcatgaaatagttatttgatttacatgtttcctaagctattccaatctcgttgattacttatttg |
289 |
Q |
| |
|
|||| | |||||| ||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||||| | || |
|
|
| T |
48140823 |
ctatggtctctcttacatttatttctcgcactcgagcatgaaatatttatttgattgacatgtgtactgtgctattccaatctcgttgattacttgtatg |
48140922 |
T |
|
| Q |
290 |
ataccacaagaagttttcttattctttgggcgttgatatgttgatacaaagttattaaatagtgatcattctt |
362 |
Q |
| |
|
|| | ||| |||| || ||| ||||||||||| || ||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
48140923 |
atgctacaggaag-cttattactctttgggcgtggagatgttgaaccaaagttatcaaatagtgattattctt |
48140994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 25244455 - 25244364
Alignment:
| Q |
101 |
gagataaatactaaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggt |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
25244455 |
gagacaaatactaaacttagcgatgtgaaaggtgtggatgaggcaaaagctgatcttgaagaaattgttcattacctaagagatcctaaggt |
25244364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 25253362 - 25253466
Alignment:
| Q |
112 |
taaacttagcgatgtgaaaggtgtagacaaggcaaaggctgaacttgaagaaattgttgattacctaaaagatcctaaggttgaattttccagcattaat |
211 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||| |||||||||||||||||| ||| |||||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
25253362 |
taaatttagcgatgtgaaaggtgtggatgaggcaaaggccgaacttgaagaaattgttcatttcctaaaagatcccgaggttgacttttctggcataaat |
25253461 |
T |
|
| Q |
212 |
ctatg |
216 |
Q |
| |
|
||||| |
|
|
| T |
25253462 |
ctatg |
25253466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 25253496 - 25253633
Alignment:
| Q |
224 |
agcatgaaatagttatttgatttacatgtttcctaagctattccaatctcgttgattacttatttgataccacaagaagttttcttattctttgggcgtt |
323 |
Q |
| |
|
||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||||| | |||| | ||| |||| || ||| ||||| ||||| |
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|
| T |
25253496 |
agcatgaaatatttatttgattgacatgtgtactgtgctattccaatctcgttgattacttgtatgatgctacaggaag-cttattactcttttggcgtg |
25253594 |
T |
|
| Q |
324 |
gatatgttgatacaaagttattaaatagtgatcattctt |
362 |
Q |
| |
|
|| ||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
25253595 |
gagatgttgaaccaaagttatcaaatagtgattattctt |
25253633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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