View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_27 (Length: 368)
Name: NF5811_low_27
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 48 - 360
Target Start/End: Original strand, 42850162 - 42850475
Alignment:
| Q |
48 |
atgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattgga |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850162 |
atgaataactctaaacaacccacatcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattgga |
42850261 |
T |
|
| Q |
148 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcac |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42850262 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcac |
42850361 |
T |
|
| Q |
247 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850362 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
42850461 |
T |
|
| Q |
347 |
ttgtgagtattatc |
360 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42850462 |
ttgtgagtattatc |
42850475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 30941787 - 30941513
Alignment:
| Q |
19 |
caaactccaagatttaatcaaaatccaatatgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaa |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| || ||||||| |||||| ||||||||||||| ||||||| ||||||||| |||| ||| |
|
|
| T |
30941787 |
caaactccaatatttaatcaaaatccaatatgagtaactccaagcaacccatgtcatcagtcaaagagataaccatacaaatagcaaaaaa-ggggaaaa |
30941689 |
T |
|
| Q |
119 |
attggaacactaatagcacttcaattggattactaccatgaattagtgatcacacatgacat-aagaatcactatttataataagccctctcacaagaag |
217 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||| ||||||||| ||| | | ||| ||||| |||| |
|
|
| T |
30941688 |
tttggaacaccaatagcactgcaattggattaataccacgaagtagtgatcactcatgacataaagagtcactatttgtaaaatgtcctttcacaggaag |
30941589 |
T |
|
| Q |
218 |
actgaacccattgtcaaaaaacctatcacaaacaaataacaccaaacacatataattccacaagactagcacaaacat |
295 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||| |
|
|
| T |
30941588 |
actgaacccaatgtc--aaaacctatcacaaaccaataacaccaaacacctataattccgccagactagcaaaaacat |
30941513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 30941156 - 30941120
Alignment:
| Q |
324 |
caaccattgtgtgtcgcttctacttgtgagtattatc |
360 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtattatc |
30941120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University