View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_3 (Length: 721)
Name: NF5811_low_3
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Complemental strand, 4349074 - 4348543
Alignment:
| Q |
13 |
aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4349074 |
aatatcccaaaagcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
4348975 |
T |
|
| Q |
113 |
aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaact |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4348974 |
aaataatccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact |
4348875 |
T |
|
| Q |
213 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatact |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348874 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatact |
4348775 |
T |
|
| Q |
313 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgcc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4348774 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgcc |
4348675 |
T |
|
| Q |
413 |
acaaacacagttggttgtgttctggacttgtactaaagccatgatgaccacttaatatcttcctttgatcttcatcttccttccatgacaatcatatgaa |
512 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348674 |
acaaacacagttggttgtgttctggacttgtactaaagccatgatgaccacttaatatcttcctttgatcttcatcttccttccatgacaatcatatgaa |
4348575 |
T |
|
| Q |
513 |
caacaaatccagaattttttccatgattcggcg |
545 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
4348574 |
caacaaatccagaattttttcca-gattcggcg |
4348543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 545 - 706
Target Start/End: Complemental strand, 4347975 - 4347814
Alignment:
| Q |
545 |
gcttttaagacctgaaagaaaattaaagattaaatggcttagtaaaccactgtttgaggaaagcaaagcaattacacagatcattaagaaaacaaatgca |
644 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4347975 |
gctttgaagaccagaaagaaaattaaagattaaatggcttagtaaaccactgtttgacgaaagcaaagcaattacacaggtcattaagaaaacaaatgca |
4347876 |
T |
|
| Q |
645 |
gcactgtccgaataggatgatgaaaatgaattgtaaatgccaagactcttcgagtgcttgat |
706 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |
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|
| T |
4347875 |
gcactcccccaataggatgatgaaaatgaattgtgaatgccaggactctttgagtgcttgat |
4347814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 674
Target Start/End: Complemental strand, 4364305 - 4364236
Alignment:
| Q |
605 |
aagcaaagcaattacacagatcattaagaaaacaaatgcagcactgtccgaataggatgatgaaaatgaa |
674 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||| |
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|
| T |
4364305 |
aagcaaagcaattatacaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaatgaa |
4364236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 602
Target Start/End: Original strand, 4318489 - 4318539
Alignment:
| Q |
552 |
agacctgaaagaaaattaaagattaaatggcttagtaaaccactgtttgag |
602 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
4318489 |
agacctgaaagaaaataaaagattgaatggcttagtaaaccactgtatgag |
4318539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 4120973 - 4121037
Alignment:
| Q |
548 |
tttaagacctgaaagaaaa-ttaaagattaaatggcttagtaaaccactgtttgaggaaagcaaa |
611 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||| ||||||||||||||||| | ||||||||||| |
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|
| T |
4120973 |
tttaagacctgaaagaaaaattaaagaatgaatagcttagtaaaccactgtatcaggaaagcaaa |
4121037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 4364421 - 4364375
Alignment:
| Q |
545 |
gcttttaagacctgaaagaaaattaaagattaaatggcttagtaaac |
591 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
4364421 |
gctttgaagacctgaaagaaaattaaagattgaatgtcttagtaaac |
4364375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 588
Target Start/End: Original strand, 4131073 - 4131116
Alignment:
| Q |
545 |
gcttttaagacctgaaagaaaattaaagattaaatggcttagta |
588 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
4131073 |
gctttgaagatctgaaagaaaattaaagattgaatggcttagta |
4131116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 606
Target Start/End: Complemental strand, 4338557 - 4338504
Alignment:
| Q |
552 |
agacctgaaagaaaattaaagattaaatggcttagtaaaccactgtttgaggaaa |
606 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||| ||| |||||||| |
|
|
| T |
4338557 |
agacctgaaagaaaattaaaggttgaat-gcttagtaaaccattgtatgaggaaa |
4338504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 25744981 - 25745427
Alignment:
| Q |
13 |
aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
25744981 |
aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatg |
25745078 |
T |
|
| Q |
113 |
aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagaaact |
212 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||| ||| | || |
|
|
| T |
25745079 |
aaataatcaccttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagct |
25745170 |
T |
|
| Q |
213 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatact |
312 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
25745171 |
aaattagatgctcttgccaatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatact |
25745270 |
T |
|
| Q |
313 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctagaagtatgaggatccaagccaccaactttagtcatagatggatattgcc |
412 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
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|
| T |
25745271 |
ggtttaagtaatgatgacttgaagcatacctgagaaagatggaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgcc |
25745370 |
T |
|
| Q |
413 |
acaaacacagttggttgtgttctggacttgtactaaagccatgatgaccacttaatatct |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25745371 |
acaaacacagttggttgtgttctggacttgtactaaagcc---atgaccacttaatatct |
25745427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 456
Target Start/End: Original strand, 18928523 - 18928659
Alignment:
| Q |
334 |
aagcatacctgagaaagatggaggactctaga---agtatgaggatccaagccaccaactttagtcatagatgg-----------atattgccacaaaca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| | |||||| |||| ||| |||||||||| ||||||||||||||| |
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|
| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatgatggatattggcatattgccacaaaca |
18928622 |
T |
|
| Q |
420 |
cagttggttgtgttctggacttgtactaaagccatga |
456 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||| |
|
|
| T |
18928623 |
cagttggttatgttttggatttgtactaaagctatga |
18928659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 36840973 - 36841042
Alignment:
| Q |
400 |
gatggatattgccacaaacacagttggttgtgttctggacttgtactaaagccatgatgaccacttaatatct |
472 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
36840973 |
gatggatattgccacaaacacagttggtaatgttttggatttgtactaaag---tcatgaccacttaatatct |
36841042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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