View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_30 (Length: 359)
Name: NF5811_low_30
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 7859024 - 7858688
Alignment:
| Q |
15 |
ataaactacaccaatatgttactgttttccgattgttgttgcattttttcacacaacaataaattaagggccctctattatgtcgttacttttttacaat |
114 |
Q |
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| T |
7859024 |
ataaactacaccaatgtgttactgttttccgattgttgttgcattttttcacacaacaataaattaagggccctctattatgtcgttacttttttacaat |
7858925 |
T |
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| Q |
115 |
cgacctaccttttaatctaataaacaaaatctccaataggaggtctctcttatcattcttagcttagttttaagagattaatttgggtttgtcatttgaa |
214 |
Q |
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| T |
7858924 |
cgacctaccttttaatctaataaacaaaatctccaataggaggtctctcttatcattcttagcttagttttaagagattaatttgggtttgtcatttgaa |
7858825 |
T |
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| Q |
215 |
tctttattatctacctagtggaaaatgacttctatgacaagcagacagttaacgatgttcaaaagaataaatcaatttcatgaaagcagcacttgaaagt |
314 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7858824 |
tctctattatctacctagtggaaaatgacttctatgacaagcagctagttaacgatgttcaaaagaataaatcaatttcatgaaagcagcacttgaaatt |
7858725 |
T |
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| Q |
315 |
acttaaataattcaaaataagatttattgatattctt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7858724 |
acttaaataattcaaaataagatttattgatattctt |
7858688 |
T |
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