View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_33 (Length: 350)
Name: NF5811_low_33
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 42511913 - 42511584
Alignment:
| Q |
11 |
cacagacgccttcgattataaatgttgaaaatgacaagtactatgtttatgtttgattcagataatgtgtcagaacagattacacaaagggataatacaa |
110 |
Q |
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| T |
42511913 |
cacacacgccttcgattagaaatgttgaaaatgacaagtactatgtttatgtttgattcagataatgtgtcagaacagattacacaaagggataatacaa |
42511814 |
T |
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| Q |
111 |
ttagagtagatcctttagataatttcaaaaagtacagaggaggatttgacatcaccaacaagaattattggagtgtaaatttctttctccatctttcttg |
210 |
Q |
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| T |
42511813 |
ttagagtagatcctttagataatttcaaaaagtacagaggaggatttgacatcaccaacaagaattattggagtgtaaatttctttctccatctttcttg |
42511714 |
T |
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| Q |
211 |
agtcttacttcaaccatcaatgatatt------gttaacttttctttaatgtttttgtagtctttgatattcactggagtatatggatatgcaattggaa |
304 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42511713 |
agtcttacttcaaccatcaatgatattgttattgttaacttttctttaatgtttctgtagtctttgatattcactggagtatatggatatgcaattggaa |
42511614 |
T |
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| Q |
305 |
tgttatgctttctatgtggaattttatatg |
334 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42511613 |
tgttatgctttctatgtggaattttatatg |
42511584 |
T |
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