View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_35 (Length: 345)
Name: NF5811_low_35
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 13885353 - 13885655
Alignment:
| Q |
4 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctggtatcagagatcgttgggaatcacct |
103 |
Q |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
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| Q |
104 |
tgtgaattttcaatgtcacctttgccgaacagtattgaatcagtgagaattggtggcgaaacagaagatggttgagaaacttcgacaatgtcgcgaactt |
203 |
Q |
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| T |
13885453 |
tgtgaattttcaa---------tgccgagcagtattgattcaatgagaattgccgttgaaacagaagatggttgagaaacttcgacaatgtcgtgaactt |
13885543 |
T |
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| Q |
204 |
cctcttcatgttcctccgatagtgggacttatgtgttgttggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacg |
303 |
Q |
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| T |
13885544 |
cctcttcacattcctccgatagtgagactt------------caggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacg |
13885631 |
T |
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| Q |
304 |
agatgttttgatattgctatgaat |
327 |
Q |
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| T |
13885632 |
agatgttttgatattgctacgaat |
13885655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 29092162 - 29092079
Alignment:
| Q |
244 |
ggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaat |
327 |
Q |
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| T |
29092162 |
ggcaggaggcatgatagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaat |
29092079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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