View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_36 (Length: 345)

Name: NF5811_low_36
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_36
NF5811_low_36
[»] chr8 (8 HSPs)
chr8 (7-338)||(43539799-43540139)
chr8 (7-140)||(43539096-43539229)
chr8 (7-135)||(59548-59676)
chr8 (6-133)||(35675612-35675739)
chr8 (7-138)||(35178803-35178934)
chr8 (6-111)||(60212-60313)
chr8 (21-78)||(28524811-28524868)
chr8 (41-137)||(2552008-2552104)
[»] chr3 (9 HSPs)
chr3 (6-135)||(26652602-26652731)
chr3 (7-143)||(27823717-27823853)
chr3 (69-134)||(47118112-47118177)
chr3 (7-139)||(17700510-17700642)
chr3 (7-134)||(17701918-17702045)
chr3 (90-133)||(20464543-20464586)
chr3 (7-138)||(48572978-48573109)
chr3 (7-78)||(40206936-40207008)
chr3 (27-63)||(40317838-40317874)
[»] chr4 (8 HSPs)
chr4 (7-134)||(29980247-29980373)
chr4 (10-133)||(39267720-39267842)
chr4 (20-75)||(21623129-21623184)
chr4 (7-133)||(39268849-39268975)
chr4 (20-84)||(21621870-21621934)
chr4 (6-132)||(29978833-29978961)
chr4 (20-63)||(32244700-32244743)
chr4 (22-78)||(2786274-2786330)
[»] chr7 (12 HSPs)
chr7 (8-133)||(8484206-8484331)
chr7 (15-135)||(8075482-8075601)
chr7 (17-143)||(8077605-8077731)
chr7 (21-133)||(48646047-48646159)
chr7 (6-137)||(35727693-35727823)
chr7 (90-129)||(48788754-48788793)
chr7 (7-134)||(7258272-7258399)
chr7 (90-129)||(44333141-44333180)
chr7 (90-136)||(385693-385739)
chr7 (89-135)||(21062813-21062859)
chr7 (90-134)||(10899155-10899199)
chr7 (21-77)||(24844627-24844683)
[»] chr2 (7 HSPs)
chr2 (7-134)||(32766238-32766365)
chr2 (21-134)||(8420010-8420123)
chr2 (20-136)||(12746213-12746329)
chr2 (21-129)||(31091540-31091648)
chr2 (21-78)||(15441984-15442041)
chr2 (99-131)||(5428361-5428393)
chr2 (90-138)||(14705129-14705177)
[»] chr5 (8 HSPs)
chr5 (21-138)||(9538062-9538179)
chr5 (90-138)||(24900414-24900462)
chr5 (22-129)||(8074453-8074560)
chr5 (93-135)||(16978988-16979030)
chr5 (59-129)||(28591165-28591235)
chr5 (90-135)||(14891225-14891270)
chr5 (39-132)||(23772809-23772902)
chr5 (6-78)||(26327070-26327142)
[»] chr1 (4 HSPs)
chr1 (20-134)||(11060796-11060910)
chr1 (9-75)||(50107204-50107270)
chr1 (21-78)||(1001207-1001264)
chr1 (7-135)||(7945553-7945681)
[»] chr6 (1 HSPs)
chr6 (21-133)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 43539799 - 43540139
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43539799 tttttaacggtaaggactaaactgataacagatgtgcatattcaaggactattttgtagtttatcctgagtaggggactaaaatgacagcgaggtgcaaa 43539898  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaattattcataaagagcaacacaaatttaggtagggacacttcaaacacataataccttc---------t 197  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         |    
T  43539899 gtcagggaccaaagtgtctatttactcaaaaattattcataaagagcaacacaaatttaggtagggacacatcaaacacataataccttcaaaacctgtt 43539998  T
Q  198 ggnnnnnnntacaaacaaaggtgcccatgaatacgtcattatatcaaatggatgttgaccgacaaatatgcattgtatcaaataccagaacttacctcct 297  Q
    ||       |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  43539999 ggaaaaaaatacaaacaaaggtgcccatgaatatgtcattatatcaaatggatgttgactgacaaatatgcatactatcaaataccagaacttacctcct 43540098  T
Q  298 ctactccgtctgtgtctgtaatgtctagatatcctttgata 338  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  43540099 ctactccatctgtgtctgtaatgtctaaatatcctttgata 43540139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 43539229 - 43539096
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||||||||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43539229 tttttaacggtaaggattaaactgataacagatatacacattcagggactattttgtagtttatcctgagtcggggactaaagtgacagcgaggtgcaaa 43539130  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaatt 140  Q
    || | |||||||||||||||||||||||| ||||    
T  43539129 gttagggaccaaagtgactatttactcaataatt 43539096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 59676 - 59548
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||  ||||||||||||||||| |||||| | | |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||    
T  59676 tttttaattgtaaggactaaactgatgacagatctacccattcagggactattttgtagtttatcctgagtcagggactaaagtgacagcgaggtgtaaa 59577  T
Q  107 gtcaaggaccaaagtgactatttactcaa 135  Q
    |||| |||| |||||||||||||||||||    
T  59576 gtcagggactaaagtgactatttactcaa 59548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 35675739 - 35675612
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 105  Q
    ||||||||||||||||| | |||||||||||||||| || |||||| || |||||||||||||||||| ||| | |||||||| ||| ||||||||||||    
T  35675739 atttttaacggtaaggattgaactgataacagatgtacatattcaaagaatattttgtagtttatcctaagttgaggactaaagtgatagcgaggtgcaa 35675640  T
Q  106 agtcaaggaccaaagtgactatttactc 133  Q
    |||||| ||||||| |||||||| ||||    
T  35675639 agtcaacgaccaaaatgactattaactc 35675612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 35178803 - 35178934
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| ||||| || |||||||||| ||||| |    
T  35178803 tttttaacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcaga 35178902  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaa 138  Q
    |||| |||||||||||||||||| ||| ||||    
T  35178903 gtcagggaccaaagtgactatttgctcgaaaa 35178934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 60212 - 60313
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 105  Q
    |||||||| ||||| ||||| ||||||||||| | | |||||||| |||||||| |||||||||||||||    ||||| ||| ||||| ||||||||||    
T  60212 atttttaaaggtaaagactagactgataacaggtctacacattcagggactattctgtagtttatcctga----gggaccaaagtgacaacgaggtgcaa 60307  T
Q  106 agtcaa 111  Q
    ||||||    
T  60308 agtcaa 60313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 28524868 - 28524811
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    ||||||| ||||||| || ||||||||||||||| || |||||| || ||||||||||    
T  28524868 gactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtc 28524811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 2552104 - 2552008
Alignment:
Q  41 tgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaa 137  Q
    |||||||||||||| || |||||| || ||||||||||   ||||   || ||||||| || ||||||||| ||||||| |||  ||||||||||||    
T  2552104 tgcacattcaaggattactttgtatttaatcctgagtcaaagactttgataacagcgacgtacaaagtcaaagaccaaaatgatcatttactcaaaa 2552008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 26652602 - 26652731
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 105  Q
    ||||||||| |||||||||||||||||||||||  | |||||||| ||||||||||||| |||||||| |||| ||||||||| |||||||||| |||||    
T  26652602 atttttaacagtaaggactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcgagatgcaa 26652701  T
Q  106 agtcaaggaccaaagtgactatttactcaa 135  Q
    ||||| ||||| ||||||||||||||||||    
T  26652702 agtcagggacccaagtgactatttactcaa 26652731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 27823853 - 27823717
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||||||| ||||||| |||||||||  |  |||||||| |||| | ||||| |||||||||  |||| || |||||||||||  ||||| |||    
T  27823853 tttttaacggtaagaactaaaccgataacagagatagacattcaaagactttattgtattttatcctggatcggagattaaaatgacagttaggtgtaaa 27823754  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaattatt 143  Q
     |||||||  ||| ||||||||| |||| ||||||||    
T  27823753 atcaaggattaaaatgactatttcctcataaattatt 27823717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 47118112 - 47118177
Alignment:
Q  69 atcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 134  Q
    ||||||||||||||||| | |||||| ||||||||| ||||| |||| |||||||| |||| ||||    
T  47118112 atcctgagtcggggacttatatgacaacgaggtgcagagtcagggactaaagtgaccatttgctca 47118177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 17700642 - 17700510
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| || ||  |  ||||| ||||||||| |    
T  17700642 tttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcaga 17700543  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaat 139  Q
    ||||| ||| ||||||||||||| ||| |||||    
T  17700542 gtcaaagactaaagtgactatttgctctaaaat 17700510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 17701918 - 17702045
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  | |||||||| ||||||| || ||||| | ||| |||||  |||||| || ||| |||||| |||||  | ||||||||||| |||| |    
T  17701918 tttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcaga 17702017  T
Q  107 gtcaaggaccaaagtgactatttactca 134  Q
     |||  ||| ||||||||||||||||||    
T  17702018 atcagagactaaagtgactatttactca 17702045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 20464543 - 20464586
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactc 133  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||    
T  20464543 tgacagcaaggtgcagagtcaaggactaaagtgactatttactc 20464586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 48573109 - 48572978
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  |||||||||| ||||||| || ||||| | |||  | ||  |||||| || |||||||||| |||||  |  ||| | ||||||||| |    
T  48573109 tttttaacgtcaaggactaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgataacgaggtgcaga 48573010  T
Q  107 gtcaaggaccaaagtgactatttactcaaaaa 138  Q
    |||| |||||||||||||||||| || |||||    
T  48573009 gtcagggaccaaagtgactatttgctaaaaaa 48572978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 40206936 - 40207008
Alignment:
Q  7 tttttaacggtaagg-actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    ||||||||| ||||| |||||||||||||| ||  ||||||||||||||||| ||| || || ||| ||||||    
T  40206936 tttttaacgttaagggactaaactgataacggaaatgcacattcaaggactaatttatacttaatcatgagtc 40207008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 40317874 - 40317838
Alignment:
Q  27 actgataacagatgtgcacattcaaggactattttgt 63  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40317874 actgataacagaagtgcacattcaaggactactttgt 40317838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 29980247 - 29980373
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    ||||||||||||| |||||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||    
T  29980247 tttttaacggtaaagactaaactgataacaaatatacacattcagggactattttgtagtttatcttgagttggggactaaagtgacagcgaggtgtaaa 29980346  T
Q  107 gtcaaggaccaaagtgactatttactca 134  Q
    ||| |||| |||||||||||||||||||    
T  29980347 gtc-aggatcaaagtgactatttactca 29980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 39267842 - 39267720
Alignment:
Q  10 ttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtc 109  Q
    |||||||||||||||||||||||||||||||| |||||||| | ||| | ||||| |||||||| | |||| |||| || ||||||||||||||||||||    
T  39267842 ttaacggtaaggactaaactgataacagatgtacacattcaggcactttattgtattttatcctcaatcggcgactgaagtgacagcgaggtgcaaagtc 39267743  T
Q  110 aaggaccaaagtgactatttactc 133  Q
     ||||  ||| |||||||||||||    
T  39267742 -aggaataaaatgactatttactc 39267720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 21623129 - 21623184
Alignment:
Q  20 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctga 75  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| || |||||||    
T  21623129 ggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctga 21623184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 39268849 - 39268975
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||||||  |||||||||||||||||  | ||| |||| | ||| | ||||| ||||| | ||||||| ||||||| |||||||||| || |||    
T  39268849 tttttaacggtaaaaactaaactgataacagagatacacgttcaggaactttattgtattttattcagagtcggagactaaagtgacagcgagatgtaaa 39268948  T
Q  107 gtcaaggaccaaagtgactatttactc 133  Q
     ||| | || ||||||| |||||||||    
T  39268949 atcaggaactaaagtgattatttactc 39268975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 21621934 - 21621870
Alignment:
Q  20 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggac 84  Q
    |||||||| ||||||| || |||||||||||| |||||||||||| || |||||||||| |||||    
T  21621934 ggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcagggac 21621870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 29978961 - 29978833
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactatttt-gtagtttatcctgagtcgggg-actaaaatgacagcgaggtgc 103  Q
    ||||||||||||||||| ||||||||||||| ||||  |  ||||  ||||||||| ||| || ||| | |||||||| |||||| ||||| ||| |||     
T  29978961 atttttaacggtaaggattaaactgataacaaatgtatattttcagagactattttggtatttaatcataagtcggggaactaaagtgacaacgaagtgt 29978862  T
Q  104 aaagtcaaggaccaaagtgactatttact 132  Q
    ||||||| | |||||| ||||||||||||    
T  29978861 aaagtcaggaaccaaaatgactatttact 29978833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 32244700 - 32244743
Alignment:
Q  20 ggactaaactgataacagatgtgcacattcaaggactattttgt 63  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||    
T  32244700 ggactaaagtgataacggatgtgcacattcaaggactactttgt 32244743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 2786330 - 2786274
Alignment:
Q  22 actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    |||||| ||||||| || ||||||||||||||| || |||||| || ||||||||||    
T  2786330 actaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtc 2786274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 8484206 - 8484331
Alignment:
Q  8 ttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaag 107  Q
    ||||||||||||| ||||||||||||||| || | |||||||| |||||||||| ||||||||| | ||||||| |||| | ||||| |||||||||||     
T  8484206 ttttaacggtaagtactaaactgataacaaatttacacattcatggactattttatagtttatcttaagtcgggaactagagtgacaacgaggtgcaaaa 8484305  T
Q  108 tcaaggaccaaagtgactatttactc 133  Q
    |||  |||||||||||||||||||||    
T  8484306 tcagagaccaaagtgactatttactc 8484331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 8075601 - 8075482
Alignment:
Q  15 ggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaagga 114  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| | |||||| ||||||| | ||| |  |||| |||||||||||    
T  8075601 ggtaaggactaaactgataacagatctacacattcaaggattattttgtagtttatcataagtcggagactaaagtaacaacatggtgtaaagtcaagga 8075502  T
Q  115 ccaaagtgactatttactcaa 135  Q
    || ||||||||||||||||||    
T  8075501 cc-aagtgactatttactcaa 8075482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 8077605 - 8077731
Alignment:
Q  17 taaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggacc 116  Q
    |||||||||||| |||||||||| | ||||||||   | |||||| || ||||||||||||||| ||||||| ||||| ||||||| |||||   |||||    
T  8077605 taaggactaaacagataacagatctacacattcagaaattattttataatttatcctgagtcggagactaaagtgacaacgaggtgtaaagttggggacc 8077704  T
Q  117 aaagtgactatttactcaaaaattatt 143  Q
    ||| |||||||||||||| ||||||||    
T  8077705 aaaatgactatttactcataaattatt 8077731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 48646159 - 48646047
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 120  Q
    ||||||| ||||||| || ||| | | ||| |||||  |||||| || |||||||||| |||||  |  ||||||||||||||| ||||| |||||||||    
T  48646159 gactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaag 48646060  T
Q  121 tgactatttactc 133  Q
    |||||||||||||    
T  48646059 tgactatttactc 48646047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 35727823 - 35727693
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaa 105  Q
    |||||||||| | ||||||||| ||||||| |||||||| | |||  ||||  ||| || || |||||||||| |||||  |  |||||||||||||||     
T  35727823 atttttaacg-tcaggactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcag 35727725  T
Q  106 agtcaaggaccaaagtgactatttactcaaaa 137  Q
    ||||| ||| |||||||||| ||| |||||||    
T  35727724 agtcagggatcaaagtgactgtttgctcaaaa 35727693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 48788754 - 48788793
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactattt 129  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  48788754 tgacagcgaggtgcaaagtcaaggatcaaagtgactattt 48788793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 7258399 - 7258272
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  | |||||||| |||||||||| ||||| | |||  ||||  |||||| || |||||||||  |||||  |  ||||| ||||||| | |    
T  7258399 tttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacctatgtgacaacgaggtgtaga 7258300  T
Q  107 gtcaaggaccaaagtgactatttactca 134  Q
    |||| |||||||||||||||||| ||||    
T  7258299 gtcagggaccaaagtgactatttgctca 7258272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 44333180 - 44333141
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactattt 129  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  44333180 tgacagcgaggtgcagagtcagggaccaaagtgactattt 44333141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 385693 - 385739
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaa 136  Q
    ||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  385693 tgacaacgagatgcagagtcaaggaccaaagtgaccatttactcaaa 385739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 21062859 - 21062813
Alignment:
Q  89 atgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 135  Q
    |||||||||||||||||||||| |||| |||||||| |||| |||||    
T  21062859 atgacagcgaggtgcaaagtcagggactaaagtgaccattttctcaa 21062813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 10899155 - 10899199
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactca 134  Q
    ||||||||||||||| ||||| |||||||||| || |||||||||    
T  10899155 tgacagcgaggtgcagagtcagggaccaaagtaacaatttactca 10899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24844683 - 24844627
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagt 77  Q
    ||||||||||||||  || |||||||||||| ||||| |||||| || |||||||||    
T  24844683 gactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagt 24844627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 32766238 - 32766365
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  |||||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||  |  ||||| ||||||||| |    
T  32766238 tttttaacgtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcaga 32766337  T
Q  107 gtcaaggaccaaagtgactatttactca 134  Q
    |||| |||||||||||||||||| ||||    
T  32766338 gtcagggaccaaagtgactatttgctca 32766365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 8420123 - 8420010
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 120  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| || ||| ||| || |||||     |||| ||||  |||| ||||| |||||||||    
T  8420123 gactaaactgataacagaagtgcacattcagggactactttgtatttaatcttgactcagggacatttgtgaccgcgaaatgcagagtcagggaccaaag 8420024  T
Q  121 tgactatttactca 134  Q
    |||| |||||||||    
T  8420023 tgaccatttactca 8420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 12746213 - 12746329
Alignment:
Q  20 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaa 119  Q
    |||||||| ||||||| || | ||||||||| | |||| |||||| || |||||||||| || ||    | ||| |||||||||| ||||||| ||||||    
T  12746213 ggactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtcaagaaccaaa 12746312  T
Q  120 gtgactatttactcaaa 136  Q
    ||||| |||||||||||    
T  12746313 gtgaccatttactcaaa 12746329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 31091540 - 31091648
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 120  Q
    ||||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||  |  ||||||| ||||||| ||||| |||||||||    
T  31091540 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagggaccaaag 31091639  T
Q  121 tgactattt 129  Q
    |||||||||    
T  31091640 tgactattt 31091648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 15441984 - 15442041
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    ||||||| |||||| | | |||||||||||||||||| |||||| || ||||||||||    
T  15441984 gactaaagtgataataaaagtgcacattcaaggactactttgtatttaatcctgagtc 15442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 5428393 - 5428361
Alignment:
Q  99 ggtgcaaagtcaaggaccaaagtgactatttac 131  Q
    |||||||||||||||||||||||||| ||||||    
T  5428393 ggtgcaaagtcaaggaccaaagtgaccatttac 5428361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 14705129 - 14705177
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 138  Q
    ||||||||||||||| ||||  |||||||||||||||||| ||| ||||    
T  14705129 tgacagcgaggtgcagagtccgggaccaaagtgactatttgctctaaaa 14705177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 9538062 - 9538179
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 120  Q
    ||||||| ||||||| || ||||||| |||  ||||  |||||| || |||||||||| |||||  | |||||| |||| |||| ||||| |||||||||    
T  9538062 gactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcagggaccaaag 9538161  T
Q  121 tgactatttactcaaaaa 138  Q
    ||||||||| ||| ||||    
T  9538162 tgactatttgctctaaaa 9538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 24900414 - 24900462
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaaaaa 138  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  24900414 tgacagcgaggtgcagagtcagggaccaaagtgactatttgctcaaaaa 24900462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 8074560 - 8074453
Alignment:
Q  22 actaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagt 121  Q
    |||||| ||||||| || ||||| | ||| |||||  |||||| || |||||||||| |||||| |  |||||||||| |||| | ||| |||| |||||    
T  8074560 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagt 8074461  T
Q  122 gactattt 129  Q
    ||||||||    
T  8074460 gactattt 8074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 16979030 - 16978988
Alignment:
Q  93 cagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 135  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  16979030 cagcaaggtgcaaagtcaaggactaaagtgactatctactcaa 16978988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 28591165 - 28591235
Alignment:
Q  59 tttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactattt 129  Q
    |||||| || |||||||||| |||||  |  ||||||||||||||| ||||| ||| ||||||||||||||    
T  28591165 tttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgactattt 28591235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 14891225 - 14891270
Alignment:
Q  90 tgacagcgaggtgcaaagtcaaggaccaaagtgactatttactcaa 135  Q
    ||||||||||||||| ||| | |||||||||||||||||| |||||    
T  14891225 tgacagcgaggtgcagagtgagggaccaaagtgactatttgctcaa 14891270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 23772902 - 23772809
Alignment:
Q  39 tgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaagtgactatttact 132  Q
    |||||||||||| | |||| |||||| || ||| || ||| ||||||   |||| |||||||||||||||||  || ||||||||| |||||||    
T  23772902 tgtgcacattcaggaactactttgtatttaatcttgtgtcagggacttttatgatagcgaggtgcaaagtcagagatcaaagtgaccatttact 23772809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 26327070 - 26327142
Alignment:
Q  6 atttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    ||||||||||  ||||||||||||||| || || |||||||| |||||  |||||| || || ||||||||||    
T  26327070 atttttaacgtcaaggactaaactgattacggaagtgcacatccaagggttattttatatttaatcctgagtc 26327142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 11060796 - 11060910
Alignment:
Q  20 ggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaa 119  Q
    |||||||| |||||||  | |||| |||||| ||||||||||||| || ||  ||||||  ||||     ||||||||||||||| ||||||||| ||||    
T  11060796 ggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttgtgacagcgaggtgcatagtcaaggatcaaa 11060895  T
Q  120 gtgactatttactca 134  Q
    ||||| |||||||||    
T  11060896 gtgaccatttactca 11060910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 50107204 - 50107270
Alignment:
Q  9 tttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctga 75  Q
    |||||||  |||||||||| ||||||| || |||||||||||  |||||||||||| || |||||||    
T  50107204 tttaacgccaaggactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctga 50107270  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 1001264 - 1001207
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtc 78  Q
    |||||||||||||||||| |||||||||||  ||||| |||||| || |||| |||||    
T  1001264 gactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtc 1001207  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 7945553 - 7945681
Alignment:
Q  7 tttttaacggtaaggactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaa 106  Q
    |||||||||  | |||||||| ||||||| || ||||| | |||  ||||  |||||| || |||||||||| || ||  |  ||||||||||||||| |    
T  7945553 tttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcaga 7945652  T
Q  107 gtcaaggaccaaagtgactatttactcaa 135  Q
    |||| |||||||| ||| ||||| |||||    
T  7945653 gtcagggaccaaaatgattatttgctcaa 7945681  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 12676483 - 12676595
Alignment:
Q  21 gactaaactgataacagatgtgcacattcaaggactattttgtagtttatcctgagtcggggactaaaatgacagcgaggtgcaaagtcaaggaccaaag 120  Q
    |||||||||||||||| | ||||||||| |  ||||| |||||| || |||||||| | | ||| |   ||||| ||||||||| |||||   | |||||    
T  12676483 gactaaactgataacaaaagtgcacatttagagactactttgtatttaatcctgagacagagaccattgtgacaacgaggtgcagagtcagatatcaaag 12676582  T
Q  121 tgactatttactc 133  Q
    |||||||||||||    
T  12676583 tgactatttactc 12676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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