View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_37 (Length: 344)
Name: NF5811_low_37
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 40959116 - 40958803
Alignment:
| Q |
17 |
tattcatctgaaaactttggataacgccatagatgatgtgggtcatggctnnnnnnnccaacacattttattagacatttgatatcatggtcgttaaaaa |
116 |
Q |
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| T |
40959116 |
tattcatctgaaaactttggataacaccatagatgatgtgggtcatggctaaaaaaaccaacatattttattagacatttgatatcctggtcgttaaaaa |
40959017 |
T |
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| Q |
117 |
taataagtaatataatacaaaatgtattcaactacaagaaaaaagaagtcccactgtcccaccttatacaaaataaaatgtagcagtggcaagtgatttt |
216 |
Q |
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| T |
40959016 |
taataagtaatataatacaaaatgtattcaactacaagaaaaaagaagtcccactgtcccaccttatacaaaataaaatgtagcagtggcaagtgatttt |
40958917 |
T |
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| Q |
217 |
ttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatcaatattaaaaaggtaactcccaaccttgagattaaatgctaactgtcg |
316 |
Q |
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| T |
40958916 |
ttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatccatattaaaaaggtaactcccaaccttgagattaaatgctaactgtcg |
40958817 |
T |
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| Q |
317 |
tagcttttgtctgt |
330 |
Q |
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| T |
40958816 |
tagcttttgtctgt |
40958803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 325
Target Start/End: Complemental strand, 40946024 - 40945818
Alignment:
| Q |
115 |
aataataagtaatataatacaaaatg--tattcaactacaagaaaaaagaagtcccactgtcccaccttatacaaaataaaatgtagcagtggcaagtga |
212 |
Q |
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| T |
40946024 |
aataataagtaatataataaaaaaaacctattcaactacaacaaaaaa--agtcccactgtcccaccttatccaaaatcatatgtcgtggtgacaagtga |
40945927 |
T |
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| Q |
213 |
ttttttatctctaaagtttcaaggacattgctcataaacatttaaggttaacgatcaatattaaaaaggtaactcccaaccttgagattaaatgctaact |
312 |
Q |
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| T |
40945926 |
ttattcatctcttaagtttcaaagac---gctgaaaaacatttaaggttaataatccatattgaaaa-gtaacttccaaccttgagattaaagactagct |
40945831 |
T |
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| Q |
313 |
gtcgtagcttttg |
325 |
Q |
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|||||| |||||| |
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| T |
40945830 |
gtcgtaacttttg |
40945818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 22507655 - 22507713
Alignment:
| Q |
249 |
aacatttaaggttaacgatcaatattaaaaaggtaactcccaaccttgagattaaatgc |
307 |
Q |
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| T |
22507655 |
aacatttaaggttaataattcatattaaaaaagtaactcacaaccttaagattaaatgc |
22507713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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