View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_39 (Length: 333)
Name: NF5811_low_39
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 29464444 - 29464747
Alignment:
| Q |
19 |
tatcatccagtgttagatgaaattaaaatcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatcca |
118 |
Q |
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| T |
29464444 |
tatcatccagtgttagatgaaattaaaatcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatcca |
29464543 |
T |
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| Q |
119 |
tatgcaatttgctagttgatacataacttttcaggcttaatctaaatgtccaaatgctgttgcaggtagacttgcaaaaaatgtggtaatgacaggaaat |
218 |
Q |
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| T |
29464544 |
tatgcaatttgctagttgatacataacttttcagggctaatctaaatgtccaaatgctgttgcaggtagacttgcaaaaaatgtggtaatgacaggaaat |
29464643 |
T |
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| Q |
219 |
gtttttctcaatgggaagnnnnnnnctccaggctatggttttgttgtaagtacactaacacatattgttgctaatcagaatttattttgagcacctattt |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29464644 |
gtttttctcaatgggaagaaaaaaactccaggctatggttttgttgtaagtacactaacacatattgttgctagtcagaatttattttgagcacctattt |
29464743 |
T |
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| Q |
319 |
tcat |
322 |
Q |
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|||| |
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| T |
29464744 |
tcat |
29464747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 29432513 - 29432616
Alignment:
| Q |
177 |
gttgcaggtagacttgcaaaaaatgtggtaatgacaggaaatgtttttctcaatgggaagnnnnnnnctccaggctatggttttgttgtaagtacactaa |
276 |
Q |
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||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
29432513 |
gttgcaggtagacttccaaaaaatgtggtgatgacgggaaatgttcttctcaatgggaagaaaaaaattccggactatggttttgttgtaagtacactaa |
29432612 |
T |
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| Q |
277 |
caca |
280 |
Q |
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|||| |
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| T |
29432613 |
caca |
29432616 |
T |
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