View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_42 (Length: 318)
Name: NF5811_low_42
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_42 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 47456052 - 47456354
Alignment:
| Q |
16 |
cagggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagttaaatagat |
115 |
Q |
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| T |
47456052 |
cagggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagttaaatagat |
47456151 |
T |
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| Q |
116 |
ttaaataattgtcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatcataagggta |
215 |
Q |
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| T |
47456152 |
ttaaataattgtcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatcataagggta |
47456251 |
T |
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| Q |
216 |
aatttgttaatgttaagagagaataatattagaaagtgaatgatgtccactgcattcaataaaaagtatgcaactgagtagagcctaagacttaaccagg |
315 |
Q |
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| T |
47456252 |
aatttgttaatgttaagagagaataatattagaaagtgaatgatgtccattgcattcaataaaaagtatgcaactgagtagagcctaagacttaaccagg |
47456351 |
T |
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| Q |
316 |
ttt |
318 |
Q |
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| T |
47456352 |
ttt |
47456354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 47461852 - 47461926
Alignment:
| Q |
22 |
ggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
96 |
Q |
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| T |
47461852 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
47461926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 47468792 - 47468871
Alignment:
| Q |
17 |
agggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
96 |
Q |
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| T |
47468792 |
agggtggtgtttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttg |
47468871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 47464678 - 47464734
Alignment:
| Q |
18 |
gggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaat |
74 |
Q |
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| T |
47464678 |
gggtggtgtttgtttgcaggtgcaaatttcagttttgctatgctcgcggagcacaat |
47464734 |
T |
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