View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_45 (Length: 303)
Name: NF5811_low_45
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 37807665 - 37807393
Alignment:
| Q |
18 |
acaataaggggttctcaccatattctctatag--tctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctatagta |
115 |
Q |
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| T |
37807665 |
acaataaggggttctcaccatattctctatagagtctggttggtaatagcttgtcttactcctaccaattcttagtatgagtgccgttagatctata--- |
37807569 |
T |
|
| Q |
116 |
tataataatcttagagagaacaatcgaagcacagagagacatatatcttctatatgtctaatgtctataagtagtacgtatctcctcttctgagttactc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37807568 |
tataataatcttagagagaacaatcgaagcacagagagacatatatcatctatatgtctaatgtctataagtagtacgtatctcctcttgtgagttactc |
37807469 |
T |
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| Q |
216 |
actcacgnnnnnnnatgaaagaaaaattaaaaacactaaaatcaatgaatttatttgaaaatactcctaatatatt |
291 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37807468 |
actcacgtttttttatgaaagaaaaattaaaaacactaaaatcaatgaatttatttgaaaatactcctgatatatt |
37807393 |
T |
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