View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_46 (Length: 296)
Name: NF5811_low_46
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 3290376 - 3290653
Alignment:
| Q |
19 |
tttatgtcacgcaagccagtcaaattggtacaacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgatacgttt |
118 |
Q |
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| T |
3290376 |
tttatgtcacgcaagccagtcaaattggtacaacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttt |
3290475 |
T |
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| Q |
119 |
tttccttagatttttggtgactgtaataccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatatatnnnnnnnnntgaatgt |
218 |
Q |
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| T |
3290476 |
tttccttagatttttggtgactgtaataccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatataaaaaaaaaaaaaaatgt |
3290575 |
T |
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| Q |
219 |
ttcaaaaccctaagacctact----------ataccacgtagacatgcttgtgaagtcacttccctcattatcctttg |
286 |
Q |
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| T |
3290576 |
tttaaaaccctaagacctacttgtgactgtaataccacgtagacatgcttgtgaagtcacttccctcatcatcctttg |
3290653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 3288282 - 3288379
Alignment:
| Q |
70 |
attacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcctt---agatttttggtgactgtaataccacgtattcacatgggt |
164 |
Q |
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| T |
3288282 |
attaaaaattccttttgatgtcagcagttcaaattggtatgatatgtttttcttttaaaagattcctagtgactgtaataccacgttgtcacatgggt |
3288379 |
T |
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