View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_47 (Length: 295)
Name: NF5811_low_47
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 50611425 - 50611149
Alignment:
| Q |
1 |
aaatcttagcaaataatgtcctttcttgtttagtattacccgaatcatctttagttactaccaacccactttcaatatcaacttcaccaccctccccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50611425 |
aaatcttagcaaataatgtcctttcttgtttagtattacccgaatcatctttagttactaccaacccactttcaatatcaacttcaccaccctccccttt |
50611326 |
T |
|
| Q |
101 |
catatttctatcatccatcccaaccccacaaaactaataattaaactttggactaaacttacatacactattataagtaattttttaaactgttcctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50611325 |
catatttctatcatccatcccaaccccacaaaactaataattaaactttggactaaacttacatacactattataagtaattttttaaactgttcctctc |
50611226 |
T |
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| Q |
201 |
acaaagaggcaannnnnnncctcaccctgattgttaacctaaactacaaaattaggttaggaattgaatcaccctgc |
277 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50611225 |
acaaagaggcaatttttttcctcaccctgattgttaacctaaactacaaaattaggttaggaattgaatcaccctgc |
50611149 |
T |
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