View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_48 (Length: 284)
Name: NF5811_low_48
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13393529 - 13393804
Alignment:
| Q |
1 |
gttttgtgtgcacacgttatttgtgttctttagacagaggtttcgtaagagaagagaaaaagtgtggttgatgaggcaattttggtgggtgaatgttatg |
100 |
Q |
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| T |
13393529 |
gttttgtgtgcacacgttttttgtgttctttagacagaggtttcgtaagagaagagaaaaagtgtggttgatgaggcaattttggtgggtgaatgttatg |
13393628 |
T |
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| Q |
101 |
cttcttttgtgtgttgttgatagcatagcacattgcttgtagtcattgaaagcgttcttgttaggaaagtgaagaaagaatgacagnnnnnnnggaaaga |
200 |
Q |
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| T |
13393629 |
cttcttttgtg---tgttgatagcatagcacattgcttgtagtcattgaaagcgttcttgttaggaaagtgaagaaagaatgacagaaagaaaggaaaga |
13393725 |
T |
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| Q |
201 |
aacgtatgagggaggattaaggatattgatttgactctcttttgatttattagtgttttttgagtttatctgtgctcct |
279 |
Q |
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| T |
13393726 |
aacgtatgagggatgattaaggatattgatttgactctcttttgatttattagtgttttttgagtttatcggtgctcct |
13393804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41766583 - 41766473
Alignment:
| Q |
1 |
gttttgtgtgcacacgttatttgtgttctttagacagaggtttcgtaagagaagagaaaaagtgtggttgatgaggcaattttggtgggtgaatgttatg |
100 |
Q |
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| T |
41766583 |
gttttgtgtgcacatgtcttttgtgttctatagaaagtggtttcgtaagagaagagaaaaagtgtggttgatgaggcaatttgggtgtgttaatgttatg |
41766484 |
T |
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| Q |
101 |
cttcttttgtg |
111 |
Q |
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| T |
41766483 |
cttcttttgtg |
41766473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 21247661 - 21247570
Alignment:
| Q |
20 |
tttgtgttctttagacagaggtttcgtaagagaagagaaaaagtgtggttgatgaggcaattttggtgggtgaatgttatgcttcttttgtg |
111 |
Q |
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|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
21247661 |
tttgtgttctatagaaagtggtttcgtaagagaagagaaaaagtgtggttgatgaggcaatttgggtgtgtgaatgttatgcttcttttgtg |
21247570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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