View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_5 (Length: 678)
Name: NF5811_low_5
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 34839324 - 34839813
Alignment:
| Q |
18 |
ttaataatcaacttctcccccctcttagtctcagatctgctgtgttagcacatccatcatcatatatcaaacaaaggtatgtattttcgttaaacccttt |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34839324 |
ttaataatcagcttctcccccctcttagtctcggatctgctgtgttagcacatccatcatcatatatcaaacaaaggtatgtattttcgttaaacccttt |
34839423 |
T |
|
| Q |
118 |
aatattaaggataaataaatgagttaaaagttatttgtaccttcttggacaactgtttttgtgtatattttgaaatgttattcttgtataattgtaaata |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34839424 |
aatattaaggataaataaataagttaaaagttatttgtaccttcttggacaactgtttttgtgtatattttgaaatgttattcttgtataattgtaaata |
34839523 |
T |
|
| Q |
218 |
ggttgcggagcttgatactaccattcggtcggaacttgagtttaaaattaaannnnnnnnnnnnnnaactaaatgcattgaacttaaat-----tatcta |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
34839524 |
ggttgcggagcttgatactaccattcggttggaacttcagtttaaaattaa------gttttttttaactaaatgcattgaacttaaattaaactatcta |
34839617 |
T |
|
| Q |
313 |
tatagttcggctcgctttggttcatatgttgacctgattacatgtataattatgtgtgcacgcgagcgcatggttgcgtgtgtctaaataagtatgacat |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||| |
|
|
| T |
34839618 |
tatagttcgg--cgctttggttcatatgttgacctgattacatgtataattatgtgtgcacgcgaacgcatgcgtgcgtgtgtctaaataaatacgacat |
34839715 |
T |
|
| Q |
413 |
tcaaacttcatagatgatggataaaccatctagtttgagaatttatacctt-aacgttgataactctttttcttcagtacgaatgtgctatgataaca |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
34839716 |
tcaaacttcatagatgatggataaaccatctagtttgagaatttataccttaaacgttgataactctatttcttcagtacgaatgttctatgataaca |
34839813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 514 - 668
Target Start/End: Original strand, 34839847 - 34840001
Alignment:
| Q |
514 |
aaatcccatctattggcattttcaaactgggaacagtgaaagtccttgcaaactgttttctatgcttttctacaccaatatcgtttgaatttggattatc |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34839847 |
aaatcccatctattggcattttcaaactgggaacagtgaaagtccttgcaaactgttttctatgcttttctacaccaacatcgtttgaatttggattatc |
34839946 |
T |
|
| Q |
614 |
tatgcttttatattgttgcagcgacttgatatcattttatctaattgttcctatg |
668 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34839947 |
tatgcttttatattgttgcagcgacttgatatcattttatctaatcgttcctatg |
34840001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 34838676 - 34838588
Alignment:
| Q |
387 |
tgcgtgtgtctaaataagtatgacattcaaacttcatagatgatggataaaccatctagtttgagaatttataccttaacgttgataac |
475 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34838676 |
tgcgtgtgtctaaataaatacgacattcaaacttcatagatgatggataaaccatctagtttaagaatttataccttaatattgataac |
34838588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 644
Target Start/End: Complemental strand, 35865840 - 35865759
Alignment:
| Q |
564 |
aactgttttctatgctttt-ctacaccaatatcgtttgaatttggattatctatgcttttatattgttgcagcgacttgata |
644 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
35865840 |
aactgttttctatgctttttctatactaacatcgtttgaatttggatgatctatgcttttctattgttgcagcgacttgata |
35865759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 455
Target Start/End: Complemental strand, 34840898 - 34840728
Alignment:
| Q |
284 |
aactaaatgcattgaacttaaattatctatatagttcggctcgctttggttcatatgttgacctgattacatgtataattatgtgtgcacgcgagcgcat |
383 |
Q |
| |
|
|||||||| | ||||| || || ||||||||||||| ||||||||| | ||||||||||||| |||| ||||| || | ||| || |||||| | | |
|
|
| T |
34840898 |
aactaaatacgttgaatttgaactatctatatagtttggctcgctt-gattcatatgttgactcgatttttcgtatagttgtctgtacatgcgagcacgt |
34840800 |
T |
|
| Q |
384 |
ggttgcgtgtgtctaaataagtatgacattcaaacttcatagatgatggataaaccatctagtttgagaatt |
455 |
Q |
| |
|
| |||| | | |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
34840799 |
gcatgcgcatatataaataagtacgacattcaaacttcaaagatgatgtgtaaaccatctagtttgagaatt |
34840728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 644
Target Start/End: Complemental strand, 34815620 - 34815544
Alignment:
| Q |
568 |
gttttctatgcttttctacaccaatatcgtttgaatttggattatctatgcttttatattgttgcagcgacttgata |
644 |
Q |
| |
|
||||||| |||||||||| || || | |||| ||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
34815620 |
gttttctgtgcttttctatactaacactgtttaaatttggattatctatgttttcctattgttgcagagacttgata |
34815544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University