View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_50 (Length: 282)
Name: NF5811_low_50
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 42225121 - 42225377
Alignment:
| Q |
17 |
attttcctggtaaaagaaagaacaccacatcgccagaatcgataaacaattagcacgagaaaaggaaaagtagctagccagtagagaaatgaaccccacc |
116 |
Q |
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| T |
42225121 |
attttactggtaaaagaaagaacaccacatagccagaatcgataaacaattagcacgagaaaaggaaaagtagctagccagtagagaaatgaaccccacc |
42225220 |
T |
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| Q |
117 |
atcatatgttcatcaactggtatatataaatataatgatgaaatggtatttcagtgaacataattatatgg----nnnnnnnnnnnnnnnnnacaaaaac |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42225221 |
atcatatgttcatcaactggtat------atataatgatgaaatggtatttcagtgaacataattatatggtttttctttttttctttttatacaaaaac |
42225314 |
T |
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| Q |
213 |
ataattgtaggtcaatatgc--ttttctctctctcaaaatactcataacatttttgttagtat |
273 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42225315 |
ataattgtaggtcaatatgcttttttctctctctcaaaatactcataacatttttgttagtat |
42225377 |
T |
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