View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_51 (Length: 281)

Name: NF5811_low_51
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_51
NF5811_low_51
[»] chr5 (8 HSPs)
chr5 (19-273)||(41711757-41712011)
chr5 (30-273)||(42125378-42125621)
chr5 (17-273)||(42130603-42130859)
chr5 (35-272)||(34238844-34239081)
chr5 (18-262)||(42118787-42119032)
chr5 (35-272)||(34230789-34231038)
chr5 (19-205)||(41569987-41570173)
chr5 (56-126)||(41433422-41433492)
[»] chr6 (1 HSPs)
chr6 (24-272)||(25520998-25521246)
[»] chr2 (2 HSPs)
chr2 (20-273)||(12250199-12250452)
chr2 (116-164)||(32680908-32680956)
[»] chr3 (1 HSPs)
chr3 (24-273)||(8524833-8525082)
[»] chr4 (1 HSPs)
chr4 (24-273)||(11120152-11120401)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 41711757 - 41712011
Alignment:
Q  19 gtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41711757 gtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacac 41711856  T
Q  119 tcaacctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttga 218  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41711857 tcaacctttcttacaatgatttctcttactcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttga 41711956  T
Q  219 aggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41711957 aggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 41712011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 42125621 - 42125378
Alignment:
Q  30 cgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaacctttct 129  Q
    |||| |||||||||| ||||||||||| ||||||||||||| | | |||||||| | ||| |||||| ||||| ||||||| ||||||||||||||||||    
T  42125621 cgtgattggcctcaatcttggctgtgaaggccttcaaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttct 42125522  T
Q  130 tacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattc 229  Q
     ||| |||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||| |||||  ||||| |||| ||||||||||||    
T  42125521 aacaatgatttctcttactctcattttcattctaagtttggtgggtttatgagtcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattc 42125422  T
Q  230 caattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  42125421 caattcaaatctcacacctttccaaattacaatcacttcatctc 42125378  T

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Target: chr5; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 42130859 - 42130603
Alignment:
Q  17 cagtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaac 116  Q
    |||||| ||||| |||| ||| |||||||||||||||||| ||||||  ||||| |||| ||||||||| ||| ||||| |||||| |||||||||||||    
T  42130859 cagtctctggtcacgtgattgacctcaaccttggctgtgaaggccttacaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaac 42130760  T
Q  117 actcaacctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttacttt 216  Q
    ||||||||||||||||| |||||||| | | || |||||||||| ||||||| || | |||  ||||||| ||||||||||| ||||| ||||| ||||     
T  42130759 actcaacctttcttacaatgatttctttgactctcattttcattataagttttgtggatttcagagtcttacacatcttgacttgtctgatagtaactta 42130660  T
Q  217 gaaggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  42130659 gaaggtgaaattccaactcaaatctctcacctatccaaattacaatcacttcatctc 42130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 34238844 - 34239081
Alignment:
Q  35 ttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaacctttcttacag 134  Q
    ||||||| |||||||| ||||| ||| ||||||||||| |||||||||||| ||| |||||| || || |||||||||||||||||||||||||| |||     
T  34238844 ttggccttaaccttggttgtgaaggctttcaaggtatactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaa 34238943  T
Q  135 tgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattccaatt 234  Q
    || ||||| |   ||| ||||| |||||||||||||  |||||  ||||||| ||||||||||| ||||| ||| | |  |||  |||||||||||   |    
T  34238944 tggtttctatggttcctattttgattctaagtttggcaggtttacgagtcttacacatcttgacttgtctaatactcatgttggcggtgaaattccttct 34239043  T
Q  235 caaatctcacacctctccaaattacaatcacttcatct 272  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  34239044 caaatctcatacctttccaaattacaatcacttcatct 34239081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 42119032 - 42118787
Alignment:
Q  18 agtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaaca 117  Q
    ||||| ||||| |||| |||| ||||||||||||| | |  |||||   |||| ||| |||||||| ||||| |||||||||||| ||||||||||||||    
T  42119032 agtctctggtcacgtgattggtctcaaccttggcttttaacgccttactggtaaattacatcctaacaatacccttttccatcttgttcatctccaaaca 42118933  T
Q  118 ctcaacctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatag-ttacttt 216  Q
    || |||||| | | || | |||||||    || | ||||||||||||||||||| | |||||||||||| ||||||||||| ||||| |||| || ||||    
T  42118932 ctaaaccttgcatccaataatttctccgcttctcgttttcattctaagtttggtggttttttgagtcttacacatcttgacttgtctcatagttttcttt 42118833  T
Q  217 gaaggtgaaattccaattcaaatctcacacctctccaaattacaat 262  Q
     ||||||||||||||| ||||||||||||| | |||||||||||||    
T  42118832 aaaggtgaaattccaactcaaatctcacacttatccaaattacaat 42118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 34230789 - 34231038
Alignment:
Q  35 ttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaacctttcttacag 134  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||||||||||| ||| ||||||||||||  ||| || ||||  |||||||||||  |||     
T  34230789 ttggccttaaccttggctgtgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaa 34230888  T
Q  135 tgatttctcttag------------tcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggt 222  Q
    | |||||||| |             |||||||||||||||||||||||  ||||| |||||||| ||||||| ||| |||||| | ||| |||| ||| |    
T  34230889 ttatttctctaacgatttctctggctcccattttcattctaagtttggcgggtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagat 34230988  T
Q  223 gaaattccaattcaaatctcacacctctccaaattacaatcacttcatct 272  Q
    ||||||||   |||||||||  |||| |||||||||||||||||||||||    
T  34230989 gaaattccttctcaaatctcggacctttccaaattacaatcacttcatct 34231038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 41569987 - 41570173
Alignment:
Q  19 gtctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacac 118  Q
    |||| |||||||||| |||| ||| |||||||||||||  |||||||||||| | |  ||||||| || |||||||| ||||||  |||||||||| |||    
T  41569987 gtctctggtcgcgtgattggtctcgaccttggctgtgaatgccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcac 41570086  T
Q  119 tcaacctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtctt 205  Q
    ||||||||||| ||| ||||||||   | ||| |||| |||||| |||||||| | |||  ||||||| ||||||||||| ||||||    
T  41570087 tcaacctttctcacaatgatttcttcaactccaatttgcattctcagtttggtggatttaagagtcttacacatcttgacttgtctt 41570173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 41433492 - 41433422
Alignment:
Q  56 atggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaacctt 126  Q
    ||||||||||||||||  | ||||| || | ||| ||||| ||||||  ||||||||||||||||||||||    
T  41433492 atggccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctt 41433422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 25520998 - 25521246
Alignment:
Q  24 tggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaac 123  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||  |||| | |||| |||||||    
T  25520998 tggtcgcgtgattggcctcaaccttggctgtgaaggcctccaaggtatattccatcctaatagtactcttttccatcttgctcatattcaaaaactcaac 25521097  T
Q  124 ctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtg 223  Q
    |||||||||| ||||||| ||   |||||||||||| ||||||||||| |||||  ||||||| |||||||| || |||||  ||||| |||| |||||     
T  25521098 ctttcttacaatgatttcactggctcccattttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagtttctttaaaggta 25521197  T
Q  224 aaattccaattcaaatctcacacctctccaaattacaatcacttcatct 272  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  25521198 aaattccaactcaaatctcacacctttccaaattacaatcacttcatct 25521246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 12250452 - 12250199
Alignment:
Q  20 tctatggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacact 119  Q
    |||||||||  ||| |||||||| ||||||||  ||| |||||| | |||||||| || ||||||| ||| |||||| |||||  |||||||||||||||    
T  12250452 tctatggtcatgtgattggcctcgaccttggcgatgaaggccttgatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacact 12250353  T
Q  120 caacctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaa 219  Q
    ||||||||||| || |||||||||  | |||||||||||||||||||||||| | || || | |||| ||||||||||| ||||| |||||| |||| ||    
T  12250352 caacctttcttccaatgatttctcaaactcccattttcattctaagtttggtggattctttaatcttacacatcttgacttgtctaatagtttctttaaa 12250253  T
Q  220 ggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    |||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  12250252 ggtgaagttccaactcaaatctcacacctttccaaattagaatcacttcatctc 12250199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 32680908 - 32680956
Alignment:
Q  116 cactcaacctttcttacagtgatttctcttagtcccattttcattctaa 164  Q
    ||||| |||||||| ||| | |||||||||| |||||||||||||||||    
T  32680908 cactcgacctttctaacaatcatttctcttactcccattttcattctaa 32680956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 8525082 - 8524833
Alignment:
Q  24 tggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaac 123  Q
    ||||| |||| |||||||||||||||||||||| || |||||||| ||| || ||||||| | ||| ||||||||||||  | || | |||| |||||||    
T  8525082 tggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggcatactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaac 8524983  T
Q  124 ctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtg 223  Q
    ||| || ||| ||||||||||   ||  |||||||||| ||||||||| |||||||||||||  ||||||||||| ||||| |||||||| || ||||||    
T  8524982 cttgctaacaatgatttctctggctcttattttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcatagttaccttaaaggtg 8524883  T
Q  224 aaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  8524882 aaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc 8524833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 11120401 - 11120152
Alignment:
Q  24 tggtcgcgtggttggcctcaaccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatcttattcatctccaaacactcaac 123  Q
    |||||||||| |||||||||| ||||||||||| || |||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||||||||||||||    
T  11120401 tggtcgcgtgattggcctcaatcttggctgtgaaggtcttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaac 11120302  T
Q  124 ctttcttacagtgatttctcttagtcccattttcattctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtg 223  Q
    |||   |||| | |||||||    || | ||||||||||||||||||| |||||  ||||||| |||||||| || ||||||||||| || || | ||||    
T  11120301 cttgtatacaataatttctccggctctcgttttcattctaagtttggtgggtttcagagtcttacacatctttacttgtcttatagtaacatttatggtg 11120202  T
Q  224 aaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 273  Q
    ||||||||| |||||||||| | || |||||||||||||| ||| |||||    
T  11120201 aaattccaactcaaatctcatatctttccaaattacaatccctttatctc 11120152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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