View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_52 (Length: 279)

Name: NF5811_low_52
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_52
NF5811_low_52
[»] chr2 (2 HSPs)
chr2 (1-263)||(33259354-33259616)
chr2 (1-72)||(35353690-35353762)
[»] chr6 (1 HSPs)
chr6 (208-257)||(14559870-14559919)
[»] chr7 (2 HSPs)
chr7 (1-68)||(32312618-32312686)
chr7 (20-60)||(4566677-4566717)
[»] chr4 (3 HSPs)
chr4 (1-71)||(36804552-36804623)
chr4 (1-72)||(23926088-23926160)
chr4 (1-61)||(36194643-36194703)
[»] chr8 (2 HSPs)
chr8 (1-90)||(32920681-32920771)
chr8 (2-90)||(1215335-1215424)
[»] chr5 (1 HSPs)
chr5 (1-90)||(6074731-6074821)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-72)||(105099-105168)
[»] chr1 (1 HSPs)
chr1 (1-72)||(34566735-34566807)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 33259354 - 33259616
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaaccaagtatatgtgaaaataacttatttaaagaaaagggaagcataaatatgatttagagagataacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  33259354 gcactaagacaaagaaatcaccaaagaaaaaccaagtatatgtaaaaataacttatttaaagaaaaggggagcataaaaatgattttgagagataacttt 33259453  T
Q  101 ctagtcaaaatcgaccatatttcacctctcttacatagatgaagtagaagaaactagagttgcaagtgactcctagagagggagagataattcatgtgca 200  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33259454 ctagtcaaaatcaaccatatttcacctctcttagatagatgaagtagaagaaactagagttgcaagtgactcctagagagggagagataattcacgtgca 33259553  T
Q  201 taattaataagaaggatgtgaattcaactttcattgttaatgtgaggatatttagttgatgct 263  Q
    || ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  33259554 tagttaataagaaggatgtgaattcaactttcaccgttaatgtgaggacatttagttgatgct 33259616  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35353762 - 35353690
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaag 72  Q
    |||||||||| | |||||||| ||||||||||| || |  |||| ||||| ||||||||||| ||||||||||    
T  35353762 gcactaagacgacgaaatcacgaaagaaaaacctaattcgatgtaaaaatcacttatttaaataaaagggaag 35353690  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 14559870 - 14559919
Alignment:
Q  208 taagaaggatgtgaattcaactttcattgttaatgtgaggatatttagtt 257  Q
    ||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  14559870 taagaaggatgtgaattcaactttcgttgttaatatgaggacatttagtt 14559919  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32312686 - 32312618
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagg 68  Q
    |||||||||| |||||||||| ||||||||||| || ||||| | ||||| ||||||||||| ||||||    
T  32312686 gcactaagacgaagaaatcacaaaagaaaaacctaaatatatttaaaaatcacttatttaaataaaagg 32312618  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 4566717 - 4566677
Alignment:
Q  20 accaaagaaaaaccaagtatatgtgaaaataacttatttaa 60  Q
    ||||||||||||| || |||| |||||||||||||||||||    
T  4566717 accaaagaaaaactaaatatacgtgaaaataacttatttaa 4566677  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36804552 - 36804623
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaa-ccaagtatatgtgaaaataacttatttaaagaaaagggaa 71  Q
    |||||||||| | |||||||| ||||||||| |||| ||||| ||||||| ||||||||||| |||| ||||    
T  36804552 gcactaagacgacgaaatcacaaaagaaaaaaccaaatatatatgaaaatcacttatttaaataaaaaggaa 36804623  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23926160 - 23926088
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaag 72  Q
    |||||||||| | |||||||| ||||||||||| || |  |||||||||| ||||||||||| | ||||||||    
T  23926160 gcactaagacgacgaaatcacgaaagaaaaacctaactcgatgtgaaaatcacttatttaaatagaagggaag 23926088  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36194703 - 36194643
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaaccaagtatatgtgaaaataacttatttaaa 61  Q
    |||||||||||| |||||||| ||||||||||    | ||||||||||| |||||||||||    
T  36194703 gcactaagacaacgaaatcacgaaagaaaaacttgatgtatgtgaaaatcacttatttaaa 36194643  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32920771 - 32920681
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaagcataaatatgatttagag 90  Q
    |||||||||| | |||||||| ||||||||||| || |  |||||||||| ||||||||||| |||| ||||| | ||| | |||||||||    
T  32920771 gcactaagacgacgaaatcacaaaagaaaaacctaattcgatgtgaaaatcacttatttaaataaaaaggaaggagaaaaacgatttagag 32920681  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 1215335 - 1215424
Alignment:
Q  2 cactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaagcataaatatgatttagag 90  Q
    ||||||||| | |||||||| |||| |||||| || |  |||||||||| ||||||||||| ||||| |||| | ||| |||||||||||    
T  1215335 cactaagacgacgaaatcacaaaaggaaaacctaattcgatgtgaaaatcacttatttaaataaaagagaaggagaaaaatgatttagag 1215424  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6074731 - 6074821
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaagcataaatatgatttagag 90  Q
    |||||||||| | ||||||||  |||||||||| || |  |||||||||| ||||||||||| |||||||||| | ||| | |||||||||    
T  6074731 gcactaagacgacgaaatcacagaagaaaaacctaattcgatgtgaaaatcacttatttaaataaaagggaaggagaaaaacgatttagag 6074821  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 105168 - 105099
Alignment:
Q  4 ctaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaag 72  Q
    ||||||||| |||||||| ||||||||||| || |  |||||||||| ||||||||||| ||| ||||||    
T  105168 ctaagacaacgaaatcacgaaagaaaaacctaattcgatgtgaaaatcacttatttaaacaaaggggaag 105099  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34566807 - 34566735
Alignment:
Q  1 gcactaagacaaagaaatcaccaaagaaaaacc-aagtatatgtgaaaataacttatttaaagaaaagggaag 72  Q
    |||||||||| | |||||||| |||| |||||| || |  |||||||||| ||||||||||| ||||||||||    
T  34566807 gcactaagacgacgaaatcacaaaaggaaaacctaattcgatgtgaaaatcacttatttaaataaaagggaag 34566735  T

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