View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_53 (Length: 276)
Name: NF5811_low_53
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 31300447 - 31300703
Alignment:
| Q |
1 |
tgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgataatgtgttaggtggtttcagacaagatagtctaagttatggaataga |
100 |
Q |
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| T |
31300447 |
tgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgatactgtgttaggtggtttcagataagatagtctgagttatggaataga |
31300546 |
T |
|
| Q |
101 |
ttattttgaggagaaagacaaaaggatggtggccattttaagtggctccctataataaggatacaatgaatgtttcgtgagataaacacacataaaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31300547 |
ttattttgaggagaaagacaaaaggatggtggccatctgaagtggctccctataataaggatacaatgaatgtttcgtgagataaacacacataaaagtc |
31300646 |
T |
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| Q |
201 |
acctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttga |
257 |
Q |
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| T |
31300647 |
acctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttga |
31300703 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 53388975 - 53388922
Alignment:
| Q |
204 |
tccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttga |
257 |
Q |
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|||||| ||||||||| |||||||| | |||||||||||||| |||||||||| |
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| T |
53388975 |
tccctctatgtcgacctccatgttttatgaagcttcccttgtggctgaagttga |
53388922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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