View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_54 (Length: 275)
Name: NF5811_low_54
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 579500 - 579252
Alignment:
| Q |
15 |
agatggagtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcacttagaatactgccta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
579500 |
agatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcacttagaatactgccta |
579401 |
T |
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| Q |
112 |
tataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg-tatgtacagatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
579400 |
tataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgttatgtacagatc |
579301 |
T |
|
| Q |
211 |
accacaggtgttgccagaccaccaactagaattgatacaaactccaaac |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
579300 |
accacaggtgttgccagaccaccaactagaattgatacaaactccaaac |
579252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 592921 - 593169
Alignment:
| Q |
15 |
agatggagtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcacttagaatactgccta |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592921 |
agatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcacttagaatactgccta |
593020 |
T |
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| Q |
112 |
tataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg-tatgtacagatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
593021 |
tataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgttatgtacagatc |
593120 |
T |
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| Q |
211 |
accacaggtgttgccagaccaccaactagaattgatacaaactccaaac |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593121 |
accacaggtgttgccagaccaccaactagaattgatacaaactccaaac |
593169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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