View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_6 (Length: 656)
Name: NF5811_low_6
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 9e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 469 - 653
Target Start/End: Original strand, 50651257 - 50651441
Alignment:
| Q |
469 |
aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttccnnnnnnnnataat |
568 |
Q |
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| T |
50651257 |
aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttcctttttttaataat |
50651356 |
T |
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| Q |
569 |
atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaagcctttgctactcc |
653 |
Q |
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| T |
50651357 |
atttggcattgattgagaagataattctgtcaaatcccagctcaatactccacaaaaatgcatctaacaaagcttttgcttctcc |
50651441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 50650959 - 50651036
Alignment:
| Q |
171 |
taagtagaaatcaaacttgataaatttataagtttataacgcacaaagtaaccactcgtgcttgatgaggcaataaac |
248 |
Q |
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| T |
50650959 |
taagtagaaatcaaacttaataaatttataagtttataacgcacaaagtaaccacttgtgcttgatgaggcaataaac |
50651036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 50651125 - 50651206
Alignment:
| Q |
337 |
ggatactttaagaataattgtaatttatgtgcaatgnnnnnnngacatagacaattgttttaacgcttagataatacaagca |
418 |
Q |
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| T |
50651125 |
ggatactttaagaataattgtaatttatgtgcaatgtttttttgacatagacaattgttttaacgctcagataatacaagca |
50651206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 50650818 - 50650868
Alignment:
| Q |
38 |
ataaactggtcaatttcttaaaataacattttataaacaagacataaaact |
88 |
Q |
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| T |
50650818 |
ataaactggtcaatttcttaaaataacattttataaacaagacataaaact |
50650868 |
T |
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