View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_61 (Length: 251)
Name: NF5811_low_61
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47555109 - 47555333
Alignment:
| Q |
1 |
tttagatgaaaagaacgtagtgatggagtcagaaaaaagttctggatggatcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatt |
100 |
Q |
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| T |
47555109 |
tttagatgaaaa-aacgtagcgatggagtcagaaaaaagttctgggtgggtcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatt |
47555207 |
T |
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| Q |
101 |
tatgtcgtaaaaagttta-----acagttgatcataaataaaattaaattacataccttagcaatttaaaataattttccacctattttgaagcatcatt |
195 |
Q |
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| T |
47555208 |
tatgtcgtaaaaagtttaagaacaaagttgatcataaataaaataaaattacataccttagcaatttaaaataattttccacctattttgaatcatcatt |
47555307 |
T |
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| Q |
196 |
ttatctcgagaaatgggaaccgctaa |
221 |
Q |
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| T |
47555308 |
ttatctcgagaaatgggaaccgctaa |
47555333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 17289460 - 17289540
Alignment:
| Q |
31 |
agaaaaaagttctggatggatcgttaaaaagaacaataaaatataaactttaatatatgaacataaaatttatgtcgtaaa |
111 |
Q |
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| T |
17289460 |
agaaaaaagtttgggatgggccgctaaaataaacgataaagtacaaactttaatatataaacacaaaatttacgtcgtaaa |
17289540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 32889328 - 32889296
Alignment:
| Q |
123 |
ttgatcataaataaaattaaattacatacctta |
155 |
Q |
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| T |
32889328 |
ttgatcataaaaaaaattaaattacatacctta |
32889296 |
T |
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