View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5811_low_66 (Length: 249)

Name: NF5811_low_66
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5811_low_66
NF5811_low_66
[»] chr4 (17 HSPs)
chr4 (2-233)||(4123706-4123937)
chr4 (6-233)||(4344729-4344956)
chr4 (19-233)||(4361160-4361374)
chr4 (3-233)||(4320390-4320617)
chr4 (50-233)||(4335428-4335611)
chr4 (110-233)||(6498401-6498524)
chr4 (110-233)||(6675786-6675909)
chr4 (111-206)||(6758834-6758929)
chr4 (110-233)||(6545323-6545446)
chr4 (110-205)||(6588071-6588166)
chr4 (126-233)||(6753043-6753150)
chr4 (144-205)||(6621416-6621477)
chr4 (111-208)||(7885267-7885364)
chr4 (110-233)||(6651150-6651273)
chr4 (111-169)||(4133290-4133348)
chr4 (114-207)||(6532111-6532204)
chr4 (137-234)||(6822773-6822870)
[»] chr6 (22 HSPs)
chr6 (106-205)||(5354485-5354584)
chr6 (104-211)||(5066563-5066670)
chr6 (28-211)||(5096813-5096996)
chr6 (101-230)||(5102480-5102609)
chr6 (115-211)||(5344966-5345062)
chr6 (107-230)||(5073780-5073903)
chr6 (101-211)||(5128283-5128393)
chr6 (115-229)||(5690039-5690153)
chr6 (104-211)||(5157497-5157604)
chr6 (104-211)||(5397055-5397162)
chr6 (104-205)||(5181796-5181897)
chr6 (115-230)||(5243793-5243908)
chr6 (101-210)||(5370677-5370786)
chr6 (104-209)||(5426017-5426122)
chr6 (115-230)||(5176825-5176940)
chr6 (115-230)||(5278652-5278767)
chr6 (104-211)||(5383431-5383538)
chr6 (108-216)||(5434135-5434243)
chr6 (110-230)||(5447673-5447793)
chr6 (27-211)||(5350499-5350677)
chr6 (104-230)||(5284258-5284384)
chr6 (101-134)||(5137532-5137565)
[»] scaffold0294 (1 HSPs)
scaffold0294 (104-230)||(8769-8895)
[»] chr5 (6 HSPs)
chr5 (110-211)||(8877714-8877815)
chr5 (117-208)||(20838740-20838831)
chr5 (117-205)||(12599054-12599142)
chr5 (117-208)||(20812385-20812476)
chr5 (126-208)||(15803019-15803101)
chr5 (115-223)||(30417913-30418021)
[»] chr3 (6 HSPs)
chr3 (107-184)||(47986744-47986821)
chr3 (107-184)||(47996031-47996108)
chr3 (107-184)||(48005318-48005395)
chr3 (107-184)||(48014603-48014680)
chr3 (115-226)||(6905806-6905917)
chr3 (115-205)||(32411083-32411173)
[»] chr8 (10 HSPs)
chr8 (115-223)||(3391536-3391644)
chr8 (117-229)||(3262629-3262740)
chr8 (115-223)||(3364262-3364370)
chr8 (115-187)||(3407323-3407395)
chr8 (117-208)||(31175955-31176046)
chr8 (118-208)||(3314966-3315056)
chr8 (118-206)||(3325003-3325091)
chr8 (116-231)||(3286516-3286631)
chr8 (117-208)||(3398522-3398613)
chr8 (115-205)||(3267198-3267288)
[»] chr7 (3 HSPs)
chr7 (113-208)||(18935494-18935589)
chr7 (113-175)||(36213707-36213769)
chr7 (113-208)||(34724464-34724559)
[»] scaffold0468 (1 HSPs)
scaffold0468 (115-226)||(6146-6257)
[»] scaffold0286 (1 HSPs)
scaffold0286 (144-205)||(6770-6831)
[»] scaffold0813 (1 HSPs)
scaffold0813 (110-233)||(4701-4824)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 4123706 - 4123937
Alignment:
Q  2 ttttggaaggacactgaaaatagacgatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123706 ttttggaaggacactgaaaatagacgatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcg 4123805  T
Q  102 ggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4123806 ggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatccacacagagaaataaatccaatgc 4123905  T
Q  202 tttttgacctcagtatggaaaagggcactttt 233  Q
    |||||||||| | ||  |||||||||||||||    
T  4123906 tttttgaccttactaccgaaaagggcactttt 4123937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 4344956 - 4344729
Alignment:
Q  6 ggaaggacactgaaaatagacgatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtg 105  Q
    |||| |||| || ||||||| |||| |||||||||||||||||||| |||||  ||||||||||| |||||||| ||  ||| |||||||| || ||| |    
T  4344956 ggaaagacattggaaatagatgatatatcatgggaaatactatttgttgcatttaaagaaacaagcgatgacatcccagcagttgtttgaaaagtgggcg 4344857  T
Q  106 ggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
     ||||  |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  4344856 agagaccatttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttt 4344757  T
Q  206 tgacctcagtatggaaaagggcactttt 233  Q
    |||||| | ||  |||||||| ||||||    
T  4344756 tgaccttactactgaaaagggtactttt 4344729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 4361374 - 4361160
Alignment:
Q  19 aaatagacgatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgt 118  Q
    ||||||| |||| |||||||||||||||||||| |||||  ||| |||||||||||||||| ||  ||| |||||||| || ||| | ||||  ||||||    
T  4361374 aaatagatgatatatcatgggaaatactatttgttgcatttaaaaaaacaagggatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgt 4361275  T
Q  119 tggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagtatg 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |  ||     
T  4361274 tggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgatcttacaatt 4361175  T
Q  219 gaaaagggcactttt 233  Q
    |||||||| ||||||    
T  4361174 gaaaagggtactttt 4361160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 4320390 - 4320617
Alignment:
Q  3 tttggaaggacactgaaaatagacgatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacat-tccgacagctgtttgaacagcg 101  Q
    |||||||||||| || ||||||| |||||||| ||| |||||| | ||||||| |  ||||| |||||||||||||| |  || ||||||||||| ||||    
T  4320390 tttggaaggacaatggaaatagatgatagatcgtggaaaatacaagttgatgcctctaaagacacaagggatgacatgtgaga-agctgtttgaaaagcg 4320488  T
Q  102 ggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgc 201  Q
    ||||  |||||||||| ||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4320489 ggtgacagattatttggtg---acatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgc 4320585  T
Q  202 tttttgacctcagtatggaaaagggcactttt 233  Q
    |||||||||| | ||  |||||||| ||||||    
T  4320586 tttttgaccttactaatgaaaagggaactttt 4320617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 4335611 - 4335428
Alignment:
Q  50 tgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgttggtaacatccaagacgaaatgatagaagga 149  Q
    |||| ||| |||||||||| ||| ||||||||| ||||||||||||||||| |||| || |||||||||||||| |||||||||| |||| |||||||||    
T  4335611 tgatacattcaaagaaacatggggtgacattccaacagctgtttgaacagctggtgagacattatttgttggtaccatccaagaccaaattatagaagga 4335512  T
Q  150 aacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagtatggaaaagggcactttt 233  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||| | ||||||||||||||| | | ||  |||||||||||||||    
T  4335511 aacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcactttt 4335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 6498401 - 6498524
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    |||||||| |||| |||||||||||  ||||| ||||||||| ||||||||||| ||||||| | ||||||  | ||||||  ||||||||||||||||     
T  6498401 attatttgatggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatccacctaaagaaatgtatccaatgctttttgat 6498500  T
Q  210 ctcagtatggaaaagggcactttt 233  Q
    || | ||| |||||||| ||||||    
T  6498501 cttactattgaaaagggaactttt 6498524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 6675909 - 6675786
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    |||||||| |||| |||||||||||  ||||| ||||||||| |||||| |||| ||||||||| | ||||| | ||| || ||||||||||| |||||     
T  6675909 attatttgatggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttcaaagccacataaagagatgaatccaatgctctttgat 6675810  T
Q  210 ctcagtatggaaaagggcactttt 233  Q
    || | ||| |||||||| ||||||    
T  6675809 cttactattgaaaagggaactttt 6675786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 6758929 - 6758834
Alignment:
Q  111 ttatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgcttttt 206  Q
    |||||||||||| |||||| ||||  ||||| | ||||||| | ||||||||  ||||||||| | ||||||||||||||||||| ||||||||||    
T  6758929 ttatttgttggtgacatcctagaccgaatgacaaaaggaaatatatcacgtgcaaatccttcaaagccacacagagaaataaatctaatgcttttt 6758834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 6545323 - 6545446
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    |||||||| |||| ||| |||||||  ||||| |||||| || ||||||||||| ||||||||| | ||||  | ||||||| |||||||||||||  |     
T  6545323 attatttgatggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaat 6545422  T
Q  210 ctcagtatggaaaagggcactttt 233  Q
    || | ||| |||||||||||||||    
T  6545423 ctaactattgaaaagggcactttt 6545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 6588071 - 6588166
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||||| |||  |||||||||||  ||||| |||||| || ||||||||||| ||||||||| | ||||| | ||||||| |||||||||||||    
T  6588071 attatttgatggcgacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacaaaaagaaatatatccaatgctttt 6588166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 6753150 - 6753043
Alignment:
Q  126 atccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagtatggaaaagg 225  Q
    |||||||||  ||||| |||||| || ||||||||||| ||||||||| | ||||  | ||||||| |||||||||||||  | || | ||| |||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagg 6753051  T
Q  226 gcactttt 233  Q
    ||||||||    
T  6753050 gcactttt 6753043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 6621416 - 6621477
Alignment:
Q  144 gaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||||||||||| ||||| ||||||||| ||||||| | ||||||| |||||||| ||||    
T  6621416 gaaggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgttttt 6621477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 7885267 - 7885364
Alignment:
Q  111 ttatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||||||||  ||| |||||||  ||| ||||||||||||||   |||||   |||||| ||| ||||| |||||||||||| |||||||||||||    
T  7885267 ttatttgttggagacagccaagactgaataatagaaggaaacactctacgtgcagatcctttataaccacatagagaaataaatgcaatgctttttga 7885364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 6651273 - 6651150
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    |||| ||| |||| |||||||||||  || || | ||||||| ||||| ||||| ||||||||| | ||||| ||||||||| |||||||| || || |     
T  6651273 attagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaat 6651174  T
Q  210 ctcagtatggaaaagggcactttt 233  Q
    || | ||| ||||| |||||||||    
T  6651173 cttactattgaaaacggcactttt 6651150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 4133290 - 4133348
Alignment:
Q  111 ttatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatcc 169  Q
    |||||||||||| ||||||||| |  ||||||||||||||| || ||||||||| ||||    
T  4133290 ttatttgttggtgacatccaagtctgaatgatagaaggaaatacttcacgtgagtatcc 4133348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 6532111 - 6532204
Alignment:
Q  114 tttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttg 207  Q
    |||| |||| |||||||||||  ||||||||||||||| ||||||  ||| ||||||||| | || || | ||||||| || ||||| ||||||    
T  6532111 tttgatggtgacatccaagaccgaatgatagaaggaaatacatcatttgaaaatccttcaaagccgcaaatagaaatatattcaatgttttttg 6532204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 6822870 - 6822773
Alignment:
Q  137 aatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagtatggaaaagggcacttttt 234  Q
    ||||| |||||| || ||||||||||| ||||||||| | || || | ||||||| |||||||||||||  | || | ||| ||||| ||||||||||    
T  6822870 aatgagagaagggaatacatcacgtgaaaatccttcaaagccgcataaagaaatatatccaatgcttttcaatcttactattgaaaatggcacttttt 6822773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 5354485 - 5354584
Alignment:
Q  106 ggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||    
T  5354485 ggagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatgctttt 5354584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 5066563 - 5066670
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||| || |||| ||| ||  |||||||||||    
T  5066563 tgggagattatttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcacaaagagatgtatccaatgctt 5066662  T
Q  204 tttgacct 211  Q
    ||||||||    
T  5066663 tttgacct 5066670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 5096996 - 5096813
Alignment:
Q  28 atagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgttggtaacat 127  Q
    |||| ||||||||| ||||||||| | |||  | ||||||||||||||||||  |   || |||||||||   || || |||||||||||||||| |||     
T  5096996 atagttcatgggaactactatttggtacatctacagaaacaagggatgacatgacattagatgtttgaactagggatgagagattatttgttggtgacaa 5096897  T
Q  128 ccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacct 211  Q
    ||||||| | |||||||| ||||||||||||||||| ||||||||||  ||||| ||||||||  |||||||||||||||||||    
T  5096896 ccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctttttgacct 5096813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 5102480 - 5102609
Alignment:
Q  101 gggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatg 200  Q
    |||||| ||||||||||||||| ||||||||||| | |||||||| |||||||||||| |||| | ||||||||| ||||| ||||| ||| ||||||||    
T  5102480 gggtggaagattatttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatg 5102579  T
Q  201 ctttttgacctcagtatggaaaagggcact 230  Q
    ||||||||||| | ||  ||||||||||||    
T  5102580 ctttttgaccttactactgaaaagggcact 5102609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 5345062 - 5344966
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacct 211  Q
    |||||||| ||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgacct 5344966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 5073780 - 5073903
Alignment:
Q  107 gagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgcttttt 206  Q
    |||||||||||| ||| ||||||||||| ||||||| || || |||||||||||||||||||||||||| || |||| ||||||| |||||||||||||     
T  5073780 gagattatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatgcttttc 5073879  T
Q  207 gacctcagtatggaaaagggcact 230  Q
    ||||| | ||  ||||||||||||    
T  5073880 gaccttactactgaaaagggcact 5073903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 5128283 - 5128393
Alignment:
Q  101 gggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatg 200  Q
    ||||||||||| |||||||||| ||||||||||| | |||||||| ||||||||||||| ||| ||||||||||  || |||||||| ||| ||||||||    
T  5128283 gggtgggagatcatttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatg 5128382  T
Q  201 ctttttgacct 211  Q
    |||||||||||    
T  5128383 ctttttgacct 5128393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 5690039 - 5690153
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| |||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||| |     
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatgctttttgaccttac 5690138  T
Q  215 tatggaaaagggcac 229  Q
     || |||||||||||    
T  5690139 aattgaaaagggcac 5690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 5157497 - 5157604
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||| || | || ||| ||  |||||||||||    
T  5157497 tgggagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatgctt 5157596  T
Q  204 tttgacct 211  Q
    ||||||||    
T  5157597 tttgacct 5157604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 5397162 - 5397055
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    |||||| ||| |||||||| |||||||||||||||||||||  |||||||| |||| ||| |||||||||||||| |||| ||| |||||||||||||||    
T  5397162 tgggaggttaattgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgctt 5397063  T
Q  204 tttgacct 211  Q
    ||| ||||    
T  5397062 tttaacct 5397055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 5181796 - 5181897
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||| ||| ||||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||||  |||||| || ||||||||    
T  5181796 tgggagattatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacacaaggaaatatatgcaatgctt 5181895  T
Q  204 tt 205  Q
    ||    
T  5181896 tt 5181897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 5243793 - 5243908
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| | |||||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||||| |||| |||||||||||||| |     
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttac 5243892  T
Q  215 tatggaaaagggcact 230  Q
    ||  ||||||||||||    
T  5243893 tactgaaaagggcact 5243908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 5370786 - 5370677
Alignment:
Q  101 gggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatg 200  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||| ||||| |||||| |||| |||||| |||  |||||||  |||||  ||||||||    
T  5370786 gggtgggagataatttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatggccacacaatgaaatgtatccaatg 5370687  T
Q  201 ctttttgacc 210  Q
    ||||||||||    
T  5370686 ctttttgacc 5370677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 5426122 - 5426017
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||||||| ||||||||||| ||||||| |  ||||||||||||||||| ||||||||||| || |||| ||| ||  |||||||||||    
T  5426122 tgggagattatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctt 5426023  T
Q  204 tttgac 209  Q
    | ||||    
T  5426022 tgtgac 5426017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 5176940 - 5176825
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||| || |||| ||| ||  ||||||||||||||||||| |     
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5176841  T
Q  215 tatggaaaagggcact 230  Q
    ||| || |||||||||    
T  5176840 tattgacaagggcact 5176825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 5278767 - 5278652
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| ||||||| || ||||| | ||||||||||||||||||||| || |||| ||| ||  ||||||||||||||||||| |     
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5278668  T
Q  215 tatggaaaagggcact 230  Q
    ||| || |||||||||    
T  5278667 tatagacaagggcact 5278652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 5383538 - 5383431
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    |||||||||||||||||   |||||||||||  |||||| || ||||||||||||||||||||||||||||  || |||| ||||||| || |||| |||    
T  5383538 tgggagattatttgttgaggacatccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactt 5383439  T
Q  204 tttgacct 211  Q
    ||||||||    
T  5383438 tttgacct 5383431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 5434243 - 5434135
Alignment:
Q  108 agattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttg 207  Q
    ||||||||||||||| |||||||||||  ||||||| | ||||| | |||  |||||||||||||||| || |||| ||| ||| |||||||||||||||    
T  5434243 agattatttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaatgctttttg 5434144  T
Q  208 acctcagta 216  Q
    | |||||||    
T  5434143 atctcagta 5434135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 5447793 - 5447673
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    ||||||| ||||| |||||||||||  ||| ||||| |||||||||||| | ||| |||||||| |||| |||| ||||||| |||||||||| || |||    
T  5447793 attatttcttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcacaaagaaatatatccaatgctcttcgac 5447694  T
Q  210 ctcagtatggaaaagggcact 230  Q
    || | ||  ||||||||||||    
T  5447693 ctaactaccgaaaagggcact 5447673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 5350677 - 5350499
Alignment:
Q  27 gatagatcatgggaaatactatttgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgttggtaaca 126  Q
    ||||| || |||||| |||||| || | |||  |||| |||||| ||||||||   | ||| ||||||||  | || |||| |||||||||||||| |||    
T  5350677 gatagttcctgggaactactatgtggtacatctaaaggaacaagagatgacatgatgtcagatgtttgaaatggggatgggtgattatttgttggtgaca 5350578  T
Q  127 tccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacct 211  Q
    |||||||   |||||||      |||||||||||||| ||||||||||| || |||| ||| ||  |||||||||||||||||||    
T  5350577 tccaagaatgaatgata------aacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgacct 5350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 5284258 - 5284384
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||||| | ||||||| ||| |||| ||  | ||||||||||| | ||| | ||| ||||| || |||| || |||| |||||||||||    
T  5284258 tgggagattatttgttgctgacatccatgacaaaattattaatggaaacacatcgcttgaaagtccctcataaccgcacaaagcaatatatccaatgctt 5284357  T
Q  204 tttgacctcagtatggaaaagggcact 230  Q
    || ||||| | ||  ||||||||||||    
T  5284358 ttcgaccttactactgaaaagggcact 5284384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 5137532 - 5137565
Alignment:
Q  101 gggtgggagattatttgttggtaacatccaagac 134  Q
    |||||||||||||||||||||| |||||||||||    
T  5137532 gggtgggagattatttgttggtgacatccaagac 5137565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 8769 - 8895
Alignment:
Q  104 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctt 203  Q
    ||||||||||||||||||  |||||||||||  ||||||||| ||||||||||||||||||||||||||||  || |||| ||||||| || |||| |||    
T  8769 tgggagattatttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactt 8868  T
Q  204 tttgacctcagtatggaaaagggcact 230  Q
    |||||||| | ||| ||||||||||||    
T  8869 tttgaccttactattgaaaagggcact 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 8877815 - 8877714
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||||| || ||||||||||| || |||| ||||||| |||||||||||||||||    
T  8877815 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatgctttttgac 8877716  T
Q  210 ct 211  Q
    ||    
T  8877715 ct 8877714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 20838831 - 20838740
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||| ||||||||||| |||||| ||||||||| |||||| |||| ||||||||||||||||| || || ||| ||||||||||||||||    
T  20838831 gttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatgctttttga 20838740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 12599054 - 12599142
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||| ||||||||||| || ||| ||||||||| ||||||||||| |||||||||||||||||||  || ||| |||||||||||||    
T  12599054 gttggtgacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatgctttt 12599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 20812476 - 20812385
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||| ||||||||||| |||||| ||||||||| ||||||||||| |||||||| |||||||| || || ||| || |||||||||||||    
T  20812476 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttga 20812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 15803101 - 15803019
Alignment:
Q  126 atccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||||||  ||||| ||||||||| |||||| |||| ||||||| ||||||||| ||||| ||| ||||||||||||||||    
T  15803101 atccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatccacatagagatatatatccaatgctttttga 15803019  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 30418021 - 30417913
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| |||||||||||   |||| | ||||||| ||||||||||  ||||||||| |||||||||| || ||| |  |||||||||| || || |     
T  30418021 ttgttggtgacatccaagaccgtatgagacaaggaaaaacatcacgtgcaaatccttcaaatccacacagggatatataaacaatgcttttcgaactaac 30417922  T
Q  215 tatggaaaa 223  Q
    |||||||||    
T  30417921 tatggaaaa 30417913  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 47986744 - 47986821
Alignment:
Q  107 gagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacag 184  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  47986744 gagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag 47986821  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 47996031 - 47996108
Alignment:
Q  107 gagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacag 184  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  47996031 gagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag 47996108  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 48005318 - 48005395
Alignment:
Q  107 gagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacag 184  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  48005318 gagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag 48005395  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 48014603 - 48014680
Alignment:
Q  107 gagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacag 184  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||    
T  48014603 gagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcacag 48014680  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 6905806 - 6905917
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| |||||| ||||||||| | ||||||||| |||||||||||||| || || || ||| |  ||||||||||||| || |     
T  6905806 ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttgatctaac 6905905  T
Q  215 tatggaaaaggg 226  Q
     |||||||||||    
T  6905906 aatggaaaaggg 6905917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 32411083 - 32411173
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||||| ||||| ||||| |||||| ||| ||||| || ||| |||| ||||||||||||||||| ||||| ||| || | ||||||||    
T  32411083 ttgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcatatccacatagagatatatatgcgatgctttt 32411173  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 3391536 - 3391644
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| |||||||||||  ||||| ||||||||| |||| | |||| ||||||||||||||||| ||||| ||| |||||||||||||||| ||||     
T  3391536 ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctcac 3391635  T
Q  215 tatggaaaa 223  Q
    ||| |||||    
T  3391636 tatcgaaaa 3391644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 3262629 - 3262740
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagta 216  Q
    |||||| ||||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||| || || ||| |||||||||||||||| || | ||    
T  3262629 gttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcc-tcatatccacatagggatatatatccaatgctttttgatcttacta 3262727  T
Q  217 tggaaaagggcac 229  Q
    | ||| |||||||    
T  3262728 ttgaatagggcac 3262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 3364370 - 3364262
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| | |||||||||  ||||| ||||||||| |||| | |||| ||||||||||||||||| ||||| ||| |||||||||||||||| ||||     
T  3364370 ttgttggtgatatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttgatctcac 3364271  T
Q  215 tatggaaaa 223  Q
    ||| |||||    
T  3364270 tatcgaaaa 3364262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 3407323 - 3407395
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagaga 187  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||| |||||    
T  3407323 ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatccacatagaga 3407395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 31176046 - 31175955
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||| ||||||||||| |||||| ||||||||| || |||| ||| ||||||||||||||||| ||||| ||| || |||||||||||||    
T  31176046 gttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatgctttttga 31175955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 3315056 - 3314966
Alignment:
Q  118 ttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||| |||| || || ||| |||||||| |||||||    
T  3315056 ttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatattcacatagggatatatatccaatgttttttga 3314966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 3325003 - 3325091
Alignment:
Q  118 ttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgcttttt 206  Q
    ||||| ||||||||||| |||||||||||||||| |||||  |||| | ||||||||||||||| || || ||| ||||||||||||||    
T  3325003 ttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatccacagagggatatatatccaatgcttttt 3325091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 3286516 - 3286631
Alignment:
Q  116 tgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcagt 215  Q
    ||||||| |||||||||||  ||||| |||  |||| |||||| |||| ||||||||||||||||| || || ||| |||  ||||||||||| || |      
T  3286516 tgttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcatatccacatagggatatatatctgatgctttttgatcttaca 3286615  T
Q  216 atggaaaagggcactt 231  Q
    || |||||||||||||    
T  3286616 attgaaaagggcactt 3286631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 3398522 - 3398613
Alignment:
Q  117 gttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||| ||||||| ||| |||||| ||||||||| ||||||   || ||||||| ||||||||| ||||| ||| || |||||||||||||    
T  3398522 gttggtgacatccatgaccaaatgagagaaggaaaaacatcagacgataatcctttatatccacatagagatatatatgcaatgctttttga 3398613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 3267198 - 3267288
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||||| |||||||||||  ||| |||||| |||| |||||   ||| ||||||||||||||||| ||||| ||| |||| ||||||||    
T  3267198 ttgttggtgacatccaagactgaataatagaatgaaaaacatcttctgataatccttcatatccacatagagatatatatccgatgctttt 3267288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 18935589 - 18935494
Alignment:
Q  113 atttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||||||  |||||||||||  ||| || ||||||||||||| |||||  ||||||||| |||||||||| |||||||||||||||||||||||    
T  18935589 atttgttggagacatccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttga 18935494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 36213707 - 36213769
Alignment:
Q  113 atttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcata 175  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  36213707 atttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcata 36213769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 34724464 - 34724559
Alignment:
Q  113 atttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttga 208  Q
    |||||||||  |||||||||||  ||| || ||||| ||||||| |||||  ||||||||| ||||||| || |||||||||||||||||||||||    
T  34724464 atttgttggagacatccaagactgaataattgaagggaacacattacgtgcaaatccttcaaatccacaaagtgaaataaatccaatgctttttga 34724559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 6146 - 6257
Alignment:
Q  115 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgacctcag 214  Q
    |||||||| ||||||||||| |||| |  |||||||| ||||||||||| |||||||||||||| || || || ||| |  ||||||||||||| || |     
T  6146 ttgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttgatctaaa 6245  T
Q  215 tatggaaaaggg 226  Q
    ||||||||||||    
T  6246 tatggaaaaggg 6257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 6831 - 6770
Alignment:
Q  144 gaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttt 205  Q
    |||||||||||||| ||||| ||||||||| ||||||| | ||||||| |||||||| ||||    
T  6831 gaaggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgttttt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 4701 - 4824
Alignment:
Q  110 attatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgac 209  Q
    |||| ||| |||| |||||||||||  || || | ||||||| ||||| ||||| ||||||||| | ||||| ||||||||| |||||||| || || |     
T  4701 attagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaat 4800  T
Q  210 ctcagtatggaaaagggcactttt 233  Q
    || | ||| ||||| |||||||||    
T  4801 cttactattgaaaacggcactttt 4824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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