View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_68 (Length: 244)
Name: NF5811_low_68
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10378955 - 10379179
Alignment:
| Q |
1 |
tctcaagaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttg |
100 |
Q |
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| T |
10378955 |
tctcaagaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttg |
10379054 |
T |
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| Q |
101 |
tttgtgtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtataga |
200 |
Q |
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| T |
10379055 |
tttgtgtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtataga |
10379154 |
T |
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| Q |
201 |
tgctgacattctcaaaggaaggtcc |
225 |
Q |
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| T |
10379155 |
tgctgacattctcaaaggaaggtcc |
10379179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10367430 - 10367500
Alignment:
| Q |
1 |
tctcaagaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
71 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
10367430 |
tctcaagaatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
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