View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_76 (Length: 235)
Name: NF5811_low_76
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40441659 - 40441440
Alignment:
| Q |
1 |
cacaaattatttcatgaaactcaccgtaattccaatcatgcattaggccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttct |
100 |
Q |
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| T |
40441659 |
cacaaattatttcatgaaactcaccgtaattccaatcatgcattaggccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttct |
40441560 |
T |
|
| Q |
101 |
ttatctaacataaacttcctccatttcatgtggttttctcttatgctcttcccaagctctttctcaccatccatcatgatgattttcactgccttcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441559 |
ttatctaacataaacttcctccatttcatgtggttttctcttatgctcttcccaggctctttctcaccatccatcatgatgattttcactgccttcagaa |
40441460 |
T |
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| Q |
201 |
tactctcttgatgaaaatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40441459 |
tactctcttgatgaaaatat |
40441440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 40444071 - 40443865
Alignment:
| Q |
14 |
atgaaactcaccgtaattccaatcatgcattaggccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttctttatctaacataa |
113 |
Q |
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|||||| ||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40444071 |
atgaaaatcaccatgattccaatcatgcattaagccaaagacttcagctgagaaaccagatcaatgataaatttattctgattttctttatctaacataa |
40443972 |
T |
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| Q |
114 |
acttcctccatttcatgtggttttctcttatgctcttcccaagctctttctcaccatccatcatgatgattttcactgccttcagaatactctcttgatg |
213 |
Q |
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| T |
40443971 |
acttcctccatttcatgtggttttctcttatgctcttccccggctctttctcatcattcaccatgatagttttcactgccttcaaaatatcttctttatg |
40443872 |
T |
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| Q |
214 |
aaaatat |
220 |
Q |
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||||||| |
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| T |
40443871 |
aaaatat |
40443865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 21876285 - 21876188
Alignment:
| Q |
47 |
gccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttctttatctaacataaacttcctccatttcatgtggttttctcttat |
144 |
Q |
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||||||||||||| | | |||| |||||| |||| ||||| |||||||||| ||||| || | ||||| |||||||||||| || ||||||||||| |
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| T |
21876285 |
gccaaagacttcaaccgcgcaatcagatctgtgatgaatttgttctgaattttcttatccaatagaaactccctccatttcatatgattttctcttat |
21876188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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