View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_77 (Length: 234)
Name: NF5811_low_77
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_77 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 5005147 - 5005010
Alignment:
| Q |
97 |
ttgtacaaatgttgtaccaaaatggtttgtgcaaatatcannnnnnnnaatggtaaaaacatatattaaaaccaaaaacggcttaacaccgaaagggaac |
196 |
Q |
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| T |
5005147 |
ttgtacaaatgttgtaccaaaatggtttgtgcaaatatcattttttttaatggtaaaaacatatattaaaaccaaaaacggcttaacaccgaaagggaac |
5005048 |
T |
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| Q |
197 |
aacacgagaatcagctgataccaccaatactccaaaac |
234 |
Q |
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| T |
5005047 |
aacacgagaatcagctgatatcaccaatactccaaaac |
5005010 |
T |
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