View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_81 (Length: 227)
Name: NF5811_low_81
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_81 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45562568 - 45562347
Alignment:
| Q |
1 |
ccatagctgtacacatcacactccctactacttactgttgtataagcattctctgtcacaagccaacaaaaacatgttgatcatccatatgagaattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45562568 |
ccatagctgtacacatcacactccctactacttactgttgtataagcattctctgtcacaagccaacaaaaacatgttaatcatccatatgagaattttg |
45562469 |
T |
|
| Q |
101 |
aaaagaaaagaaacattcaatcaatagttagttacctggtgcaatataaccaattgtgcccggcacagataaggaagggtttgatgtagaagactggtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45562468 |
aaaagaaaagaaacattcaatcaatagttagttacctggtgcaatataaccaattgtgcccggcacagataaggaagggtttgatgtagaagactggtcc |
45562369 |
T |
|
| Q |
201 |
agaagtttggcaataccaaagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45562368 |
agaagtttggcaataccaaagt |
45562347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University