View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_83 (Length: 226)
Name: NF5811_low_83
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 24184773 - 24184973
Alignment:
| Q |
3 |
agctaactcattatctctacgagagccatttgtattcaacttaacctatatccctctaaaggaggcttccaaccaatttgaacaatttcacaaggtgatg |
102 |
Q |
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| T |
24184773 |
agctaactcattatctctacgagagccatttgtattcaacttaacctatatccctctaaaggaggcttccaaccaatttgaacaatttcacaaggtgatg |
24184872 |
T |
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| Q |
103 |
ccttaacaactctactcgccttgtatgctctatgatattctgaaatacgcttcaaaacatgattggatggataatgaggcttggaaaaatgcacttcatg |
202 |
Q |
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| T |
24184873 |
ccttaacaactctattcaccttgtatgctctatgatattctcaaatacgcttcaaaacatgattggatgg--aatgaggcttggaaacatgcacttcatg |
24184970 |
T |
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| Q |
203 |
aat |
205 |
Q |
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||| |
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| T |
24184971 |
aat |
24184973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 4065061 - 4065217
Alignment:
| Q |
3 |
agctaactcattatctctacgagagccatttgtattcaacttaacctatatccctctaaaggaggcttccaaccaatttgaacaatttcacaaggtgatg |
102 |
Q |
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| T |
4065061 |
agctaacccattatctctacaacagtcatccgtattcaacttaactcgt--ccctctaaaagaggcttccaaccactttgaacaatttcacgaggtgacg |
4065158 |
T |
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| Q |
103 |
ccttaacaactctactcgccttgtatgctctatgatattctgaaatacgcttcaaaaca |
161 |
Q |
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| T |
4065159 |
ccataacaactctacacaccttgtctgttatatgatattctcgaataagcttcaaaaca |
4065217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 9866059 - 9866123
Alignment:
| Q |
34 |
gtattcaacttaacctatatccctctaaaggaggcttccaaccaatttgaacaatttcacaaggtga |
100 |
Q |
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| T |
9866059 |
gtattcaacttaacccat--cccggtaaaggaggcttcctacctatttgaacaatttcacgaggtga |
9866123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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