View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_88 (Length: 213)
Name: NF5811_low_88
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 44308941 - 44308750
Alignment:
| Q |
4 |
atcacaccaaattaaggagaccctaaaattaaacgacttttcttctcattttgggtctgattatacccaaaataacataaccatgcaaggaatgcaattt |
103 |
Q |
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| T |
44308941 |
atcacaccaaattaaggagaccctaaaattaaacgactttttttctcattttgggtttgattatacccaaaataacataaccatgcaaggaatgcaattt |
44308842 |
T |
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| Q |
104 |
aaagtttatcaacggctctggatgcaagagaactaaggaataggatttgcttgttaagagcagtaatagcagggttaacaatatgcgcatca |
195 |
Q |
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| T |
44308841 |
aaagtttatcaacggctctggatgcaagagaactaaggaataggatttgcttgttaagagcagtaatagcagggttaacaatatgcgcatca |
44308750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 44194942 - 44194791
Alignment:
| Q |
43 |
ttcttctcattttgggtctgattatacccaaaataacataaccatgcaaggaatgcaatttaaagtttatcaacggctctggatgcaagagaactaagga |
142 |
Q |
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| T |
44194942 |
ttcttctcattttgggt-taagtatacccaaaataacacaaccatacaaggaatgcaatttaaagtttatcaacggctttggatgcaagttcactaagga |
44194844 |
T |
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| Q |
143 |
ataggatttgcttgttaagagcagtaatagcagggttaacaatatgcgcatca |
195 |
Q |
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| T |
44194843 |
atgcgatttgcttgttaagagcagtaatagcagggttaacaatatgctcatca |
44194791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 44301376 - 44301225
Alignment:
| Q |
43 |
ttcttctcattttgggtctgattatacccaaaataacataaccatgcaaggaatgcaatttaaagtttatcaacggctctggatgcaagagaactaagga |
142 |
Q |
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| T |
44301376 |
ttcttctcattttgggt-taagtatacccaaaataacacaaccatacaaggaatgcaatttaaagtttatcaacggctttggatgcaagttcactaagga |
44301278 |
T |
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| Q |
143 |
ataggatttgcttgttaagagcagtaatagcagggttaacaatatgcgcatca |
195 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44301277 |
atgcgatttgcttgttaagagcagtaatagcagggttaacaatatgctcatca |
44301225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44316014 - 44315979
Alignment:
| Q |
1 |
atcatcacaccaaattaaggagaccctaaaattaaa |
36 |
Q |
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| T |
44316014 |
atcatcacaccaaattaagtagaccctaaaattaaa |
44315979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 44315854 - 44315804
Alignment:
| Q |
138 |
aaggaataggatttgcttgttaagagcagtaatagcagggttaacaatatg |
188 |
Q |
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| T |
44315854 |
aaggaataagatttgacggttaagagcagtaacagcagggttaacaatatg |
44315804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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