View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_89 (Length: 212)
Name: NF5811_low_89
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 13115191 - 13115370
Alignment:
| Q |
15 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13115191 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaatcccc |
13115290 |
T |
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| Q |
115 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
194 |
Q |
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| T |
13115291 |
tcaccaagaagatcagtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
13115370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 18670247 - 18670068
Alignment:
| Q |
15 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
18670247 |
cacagaacaactaaaatctcgaagaactcttgtagaaaattcatagctagcaattttcctctgttgcttccacttgtcaccatcaacagcaaaaatcccc |
18670148 |
T |
|
| Q |
115 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
194 |
Q |
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| T |
18670147 |
tcaccaaaaagatcagtaataatatcttgattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
18670068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 13099922 - 13100101
Alignment:
| Q |
15 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
114 |
Q |
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| T |
13099922 |
cacagaacaactaaaatctctaagaactcttgtggagaattcatagcttgcaactttcctctgctgtctccacttgtcaccatcaacggcaaaaatcccc |
13100021 |
T |
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| Q |
115 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
194 |
Q |
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||||||| |||||| || |||| ||||| | ||||||||||| ||||||| |||||||||||||||||||||| |||||| |
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| T |
13100022 |
tcaccaaaaagatctgtcataacatcttgactatacttacctctagaatatttatcaaaattggttttcaatacatgttc |
13100101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 13105717 - 13105896
Alignment:
| Q |
15 |
cacagaacaactaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccc |
114 |
Q |
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|||||| |||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||| ||| |
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| T |
13105717 |
cacagagcaactaaaatctctaagaactcttgtggagaattcatagctagcaaccttcctctgctgcttccacttgttaccatcaacaacaaaaatcccc |
13105816 |
T |
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| Q |
115 |
tcaccaagaagatcggtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
194 |
Q |
| |
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||||||| |||||| || |||||||||| | ||||||||||| ||||||| |||||||| || |||||||||| |||||| |
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| T |
13105817 |
tcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttc |
13105896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 13080402 - 13080505
Alignment:
| Q |
25 |
ctaaaatctctaagaactcttgtagaaaattcatagctagcaatttttctctgctgcttccacttgtcaccatcaacagcaaaaattccctcaccaagaa |
124 |
Q |
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||||||||||||||||||||||||||||| || | |||| || || || || ||| |||| || ||||||||||||||||||| || ||||| | || |
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| T |
13080402 |
ctaaaatctctaagaactcttgtagaaaactccaaactagaaagcttcctttggtgcctccatttagcaccatcaacagcaaaaatcccatcacccaaaa |
13080501 |
T |
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| Q |
125 |
gatc |
128 |
Q |
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|||| |
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| T |
13080502 |
gatc |
13080505 |
T |
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