View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5811_low_9 (Length: 575)
Name: NF5811_low_9
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 50108601 - 50109148
Alignment:
| Q |
18 |
gaatcatttaacacaattgtacaagtcccaa-gtctttcaccatatcagtccttgcaatatgaagtacatgagatcaggggtggagggtaatgttaactt |
116 |
Q |
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| T |
50108601 |
gaatcatttaacacaattgcacaagtcccaaagtctttcaccatatcagtccttgcaatatgaagtacatgagatcaggggtggagggtaatgttaactt |
50108700 |
T |
|
| Q |
117 |
agggtggccttggcgattctattttatcttaatttatttagnnnnnnnnnnataagttagtgtattattgtgtttagccactctcataatatatataatt |
216 |
Q |
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| T |
50108701 |
agggtggccttggcgattctattttatcttaatttatttagttttttttg-ataagttagtgtattattgtgtttagccactctcataatatatataatt |
50108799 |
T |
|
| Q |
217 |
agctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatattttattttatctatatatttagttcctcac |
316 |
Q |
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| T |
50108800 |
agctatcccaaaaatttcagtctctactttatcaacaacaaaaatttcaagataatattcgtaaaaatattttattttatctatatatttagttcctcac |
50108899 |
T |
|
| Q |
317 |
aaaactttggctaatttcgctactgtcaacaatgatttggttagataagaaagtttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaa |
416 |
Q |
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| T |
50108900 |
aaaactttggctaatttcgctactgccaacgatgatttggttatataagaaagtttcttatgatcccttacatgtttttggatgtaaagcatcctgtaaa |
50108999 |
T |
|
| Q |
417 |
gagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagttttattatgttgttatgaagaaacttatcggatgttgtgatgttgat |
516 |
Q |
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| T |
50109000 |
gagtcaaaattgtgtgtttagtggctactacctagatggagctcgttacaagttttattatgttgttatgaagaaacttatcagatgttgtgatgttgat |
50109099 |
T |
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| Q |
517 |
ttcatagaagacaagtagttgacagacattgatagaattagtgatgatg |
565 |
Q |
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| T |
50109100 |
ttcatagaagacaagtagttgacagacattgatagaattagtgatgatg |
50109148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 4430105 - 4430064
Alignment:
| Q |
168 |
ataagttagtgtattattgtgtttagccactctcataatata |
209 |
Q |
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| T |
4430105 |
ataagttagtgtatttttgtgtttagccactctaataatata |
4430064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 506
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
370 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
469 |
Q |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
|
| Q |
470 |
tttattatgttgttatgaagaaacttatcggatgttg |
506 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 42172197 - 42172134
Alignment:
| Q |
242 |
actttatcaacaacaaaaatt-tcaagataatattcgtaaaaatattttattttatctatatattt |
306 |
Q |
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| T |
42172197 |
actttgtcaacaacgaaaattgtcaagataat--tcgtaaaagtattttattttttctatatattt |
42172134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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