View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5811_low_93 (Length: 204)
Name: NF5811_low_93
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5811_low_93 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 25984473 - 25984569
Alignment:
| Q |
94 |
gcacaatcctttatggaaaacaatatggttttaaattagttcaaattgacaaaaagtctagataccatcttagtgagaagtgatcgtggagaataat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25984473 |
gcacaatcctttatggaaaacaatatggttttaaattagttcaaattgacaaaaagtctagataccatcttagtgagaagtgatcgtggagaataat |
25984569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25983833 - 25983864
Alignment:
| Q |
18 |
taagcttaccttgttttagattttgctaactt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25983833 |
taagcttaccttgttttagattttgctaactt |
25983864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 25981654 - 25981691
Alignment:
| Q |
18 |
taagcttaccttgttttagattttgctaacttgtgagg |
55 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
25981654 |
taagcttacattgttttagattttgctaacgtgtgagg |
25981691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 25982743 - 25982780
Alignment:
| Q |
18 |
taagcttaccttgttttagattttgctaacttgtgagg |
55 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
25982743 |
taagcttacattgttttagattttgctaacgtgtgagg |
25982780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University