View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812-Insertion-1 (Length: 1160)

Name: NF5812-Insertion-1
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812-Insertion-1
NF5812-Insertion-1
[»] scaffold0902 (2 HSPs)
scaffold0902 (103-699)||(2197-2787)
scaffold0902 (720-869)||(2051-2200)
[»] chr5 (6 HSPs)
chr5 (530-674)||(32401514-32401659)
chr5 (530-623)||(14808519-14808612)
chr5 (552-640)||(27214000-27214088)
chr5 (766-831)||(135090-135155)
chr5 (545-602)||(11824676-11824733)
chr5 (530-595)||(12882758-12882823)
[»] chr7 (7 HSPs)
chr7 (530-674)||(11790380-11790525)
chr7 (551-677)||(25616224-25616351)
chr7 (531-663)||(21416788-21416921)
chr7 (532-611)||(14069058-14069137)
chr7 (532-611)||(14379086-14379165)
chr7 (552-629)||(31001741-31001818)
chr7 (537-615)||(9111680-9111758)
[»] chr6 (7 HSPs)
chr6 (530-677)||(29618377-29618525)
chr6 (534-677)||(35241656-35241800)
chr6 (756-831)||(9884592-9884667)
chr6 (537-622)||(1377772-1377857)
chr6 (537-622)||(1385520-1385605)
chr6 (258-327)||(14247819-14247888)
chr6 (549-667)||(34182093-34182212)
[»] chr4 (15 HSPs)
chr4 (530-677)||(40756232-40756380)
chr4 (531-677)||(17318528-17318675)
chr4 (532-669)||(29907639-29907777)
chr4 (531-677)||(7104069-7104213)
chr4 (530-676)||(9741794-9741941)
chr4 (532-657)||(43472919-43473045)
chr4 (539-629)||(9745259-9745349)
chr4 (530-677)||(50430002-50430150)
chr4 (530-629)||(44527727-44527826)
chr4 (530-674)||(11422573-11422716)
chr4 (539-617)||(25143991-25144069)
chr4 (530-578)||(42319279-42319327)
chr4 (543-640)||(42181509-42181606)
chr4 (530-622)||(33142992-33143087)
chr4 (552-629)||(52493539-52493616)
[»] scaffold0578 (1 HSPs)
scaffold0578 (530-676)||(4241-4388)
[»] chr2 (9 HSPs)
chr2 (530-676)||(5007290-5007437)
chr2 (530-676)||(17539119-17539266)
chr2 (534-675)||(20559391-20559528)
chr2 (756-831)||(20421249-20421324)
chr2 (533-623)||(5953178-5953268)
chr2 (532-578)||(23497242-23497288)
chr2 (539-596)||(467989-468046)
chr2 (626-672)||(23497190-23497237)
chr2 (569-640)||(35024952-35025023)
[»] chr8 (10 HSPs)
chr8 (542-674)||(9492442-9492575)
chr8 (530-677)||(8970356-8970504)
chr8 (528-677)||(19237828-19237978)
chr8 (528-677)||(19311012-19311162)
chr8 (531-677)||(14154339-14154486)
chr8 (530-643)||(7027747-7027853)
chr8 (561-677)||(38141439-38141556)
chr8 (562-677)||(25481766-25481882)
chr8 (530-677)||(2537620-2537768)
chr8 (539-617)||(32646034-32646112)
[»] chr1 (6 HSPs)
chr1 (543-672)||(43543979-43544109)
chr1 (547-659)||(18746173-18746285)
chr1 (530-661)||(2740031-2740163)
chr1 (766-832)||(15607051-15607117)
chr1 (533-580)||(15262084-15262131)
chr1 (539-602)||(31346223-31346286)
[»] chr3 (9 HSPs)
chr3 (533-676)||(1661225-1661369)
chr3 (533-623)||(9490708-9490798)
chr3 (530-643)||(55455653-55455766)
chr3 (531-677)||(46513350-46513497)
chr3 (531-654)||(19624673-19624797)
chr3 (562-677)||(31497107-31497223)
chr3 (562-629)||(9606588-9606655)
chr3 (532-580)||(3619498-3619546)
chr3 (562-629)||(9600943-9601010)
[»] scaffold0785 (1 HSPs)
scaffold0785 (562-676)||(463-578)
[»] scaffold0129 (1 HSPs)
scaffold0129 (553-656)||(44499-44603)
[»] scaffold0524 (1 HSPs)
scaffold0524 (536-643)||(9648-9755)
[»] scaffold1801 (2 HSPs)
scaffold1801 (108-167)||(563-622)
scaffold1801 (692-788)||(615-711)
[»] scaffold1118 (1 HSPs)
scaffold1118 (784-844)||(2284-2345)
[»] scaffold1176 (1 HSPs)
scaffold1176 (284-387)||(1853-1965)
[»] scaffold0003 (1 HSPs)
scaffold0003 (756-829)||(111889-111962)
[»] scaffold1652 (1 HSPs)
scaffold1652 (122-172)||(1159-1209)


Alignment Details
Target: scaffold0902 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 103 - 699
Target Start/End: Complemental strand, 2787 - 2197
Alignment:
Q  103 tttacacagaaacacacacataataaaaacataactgccgataatcactatcataagcagtctaatacaaataaatcctagttgaagcctctagctagtt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787 tttacacagaaacacacacataataaaaacataactgccgataatcactatcataagcagtctaatacaaataaatcctagttgaagcctctagctagtt 2688  T
Q  203 atagaagaaaaataaaagtaactccatcaatgnnnnnnngattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaagg 302  Q
    |||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2687 atagaagaaaaataaaagtaactccatcgatgttttttttattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaagg 2588  T
Q  303 aaaattattcttagttttgtttggtagtgtactagtatactctccctcacagatccttagtccttttttaggaaaattaattattttaatggacgattta 402  Q
    ||||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2587 aaaatcattcttagttttgtttggta-----ctagtatactctccctcacagatccttagtccttttttaggaaaattaattattttaatggacgattta 2493  T
Q  403 tcacctatttctatatgtttgtacctaatttctattcccaatagttatgggcttatggccattggccatgttatgtaatcgcttctatgaaaaagtgatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2492 tcacctatttctatatgtttgtacctaatttctattcccaatagttatgggcttatggccattggccatgttatgtaatcgcttctatgaaaaagtgatt 2393  T
Q  503 tgtttcaatgatannnnnnnnnnnnaagttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagt 602  Q
    |||||||||||||            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2392 tgtttcaatgata-ttttttttttgaagttaaagacaatttcattaatgaaagtctggcaataaatcaaatgtcaagactacagaaatacaaggcggagt 2294  T
Q  603 ttcttcgatccatatgcaatccaaattcttaagagcatattagcaaaataatgagcagcttagttggcttcacgcatacaaattattcacagtctta 699  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2293 ttcttcgatccatatgcaatctaaattcttaagagcatattagcaaaataatgagcagcttggttggcttcacgcatacaaattattcacagtctta 2197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 720 - 869
Target Start/End: Complemental strand, 2200 - 2051
Alignment:
Q  720 cttatgatgaactgagtaagtgtttaaattgtgcttttgttataaatttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattgg 819  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2200 cttatgatgaactgagtaagtgtttaaattgtgcttttgttatagatttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattgg 2101  T
Q  820 cctagtactagatcaaacatgcttaaataagactcataatatcccgcttc 869  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  2100 cctagtactagatcaaacatgcttaaataaggctcataatatcctgcttc 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 5e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 530 - 674
Target Start/End: Original strand, 32401514 - 32401659
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||| ||| ||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  32401514 gttaaaaacagtttcattaacgaaagtctggcaataaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaaatt 32401613  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttca 674  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||    
T  32401614 cttaagagcatatttagctaaataatgagcagcttggttggcttca 32401659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 530 - 623
Target Start/End: Original strand, 14808519 - 14808612
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatc 623  Q
    |||||||||||||||||||| ||| |||||| || ||||||||||||||| || ||||||||||||||||||| |||||| | |||||||||||    
T  14808519 gttaaagacaatttcattaacgaatgtctgataagaaatcaaatgtcaaggctgcagaaatacaaggcggagtctcttcgtttcatatgcaatc 14808612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 552 - 640
Target Start/End: Original strand, 27214000 - 27214088
Alignment:
Q  552 aaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcat 640  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  |||| ||||| |||||||||||||| ||||| | ||||||||    
T  27214000 aaagtatgacaataaatcaaatgtcaagactacataaatacaaggtagagtctcttcaatccatatgcaatctaaattatgaagagcat 27214088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 766 - 831
Target Start/End: Original strand, 135090 - 135155
Alignment:
Q  766 tttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactaga 831  Q
    ||||| || |||||||||| ||| |||||||||||||| | ||||| |||||||||||||||||||    
T  135090 tttttttttttactgtttatgtccaggggaattgatgacgtcttctaacattggcctagtactaga 135155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 11824676 - 11824733
Alignment:
Q  545 attaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagt 602  Q
    ||||| |||||||| ||||||||||||| ||||||| | ||||||||| ||| |||||    
T  11824676 attaacgaaagtctcacaataaatcaaaagtcaagagtgcagaaatactaggtggagt 11824733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 595
Target Start/End: Original strand, 12882758 - 12882823
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaag 595  Q
    |||||| | |||||| |||| |||||| ||| |||||||||||||| ||||||||| | |||||||    
T  12882758 gttaaacataatttctttaacgaaagtttgaaaataaatcaaatgttaagactacacacatacaag 12882823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 1e-47; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 530 - 674
Target Start/End: Original strand, 11790380 - 11790525
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||    
T  11790380 gttaaagacaatttcattatcgaaagtctgacaataaatcaaatgtcaagactacataaatacaaggcagagtttcttcgatccatatgcaatctagatt 11790479  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttca 674  Q
    ||||||| |||| ||||| |||||||||||||| | ||||||||||    
T  11790480 cttaagatcatatttagctaaataatgagcagcgtggttggcttca 11790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 551 - 677
Target Start/End: Original strand, 25616224 - 25616351
Alignment:
Q  551 gaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttagcaaa 649  Q
    |||||| || |||||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||| |||||||||| |||||| || || ||    
T  25616224 gaaagtttggcaataaatcaaatgtcaagactgcagaaatataaggcggagtttcttcaatccgtatgcaatctaaattcttaaaagcatattttgctaa 25616323  T
Q  650 ataatgagcagcttagttggcttcacgc 677  Q
    ||||||||||| || ||||| |||||||    
T  25616324 ataatgagcagattggttggattcacgc 25616351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 531 - 663
Target Start/End: Complemental strand, 21416921 - 21416788
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattc 630  Q
    ||||||| ||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||| | ||| | || |||||| |||||||| |||||     
T  21416921 ttaaagataattttattaacaaaagtctgacaataaatcaaatgtcaagactgcagaaatacaaggtgaagtctttttgatccagatgcaatctaaatta 21416822  T
Q  631 ttaagagcat-attagcaaaataatgagcagctt 663  Q
    | ||||||||  ||| | ||||||||||||||||    
T  21416821 tgaagagcatgtttatctaaataatgagcagctt 21416788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 532 - 611
Target Start/End: Original strand, 14069058 - 14069137
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgat 611  Q
    |||||| || |||||||| ||||||||| ||| |||||||| ||||||||| |  |||||||||||||||||||||||||    
T  14069058 taaagataaattcattaacgaaagtctggcaacaaatcaaaagtcaagactgcgaaaatacaaggcggagtttcttcgat 14069137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 532 - 611
Target Start/End: Original strand, 14379086 - 14379165
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgat 611  Q
    |||||| || |||||||| ||||||||| ||| |||||||| ||||||||| |  |||||||||||||||||||||||||    
T  14379086 taaagataaattcattaacgaaagtctggcaacaaatcaaaagtcaagactgcgaaaatacaaggcggagtttcttcgat 14379165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 552 - 629
Target Start/End: Complemental strand, 31001818 - 31001741
Alignment:
Q  552 aaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| | ||| | |||||||| ||||||||||| |||||    
T  31001818 aaagtctgacaataaattaaatgtcaagactgcggaaatacaacgtggaatctcttcgattcatatgcaatctaaatt 31001741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 537 - 615
Target Start/End: Original strand, 9111680 - 9111758
Alignment:
Q  537 acaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccat 615  Q
    |||||||||||||| ||| | ||||| ||||||||| || |||||| || ||||| |||||| ||| ||||| ||||||    
T  9111680 acaatttcattaataaaaatttgacagtaaatcaaaagttaagactgcaaaaatataaggcgaagtctcttcaatccat 9111758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 4e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 530 - 677
Target Start/End: Original strand, 29618377 - 29618525
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  29618377 gttaaagacaaattcattaataaaagtctgacaataaatcaaaagtcaagactgcagaaatacaaggtggagtttcttcgatccatatgcaatctaaatt 29618476  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||||| ||| | ||||||||| ||| || |||||||||||||    
T  29618477 cttaagagcatatttaactaaataatgaacagtttggttggcttcacgc 29618525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 534 - 677
Target Start/End: Original strand, 35241656 - 35241800
Alignment:
Q  534 aagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattctta 633  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||||| |||||||||    
T  35241656 aagacaatttcattaacgaaagtctggcaataaatcaaatgtcaagactgtagaaatacaaggcggagtttcttcgacctatatgcaatctaaattctta 35241755  T
Q  634 agagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    ||| |||| ||||| |||||||||||||  | |||||||| ||||    
T  35241756 agaacatatttagctaaataatgagcagtctggttggctttacgc 35241800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 9884667 - 9884592
Alignment:
Q  756 ttgttataaatttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactaga 831  Q
    |||||||| |||||| |||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  9884667 ttgttatagattttttttcttagtgtttaggtccaggggaattgatgaagtcttctaacattggcctagtactaga 9884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 1377857 - 1377772
Alignment:
Q  537 acaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaat 622  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||   ||||||| |||| ||| |||||||||||||||||||||    
T  1377857 acaatttcattaatgaaagtctagcaataaattaaatgtcaagaccgtagaaatataaggtggaatttcttcgatccatatgcaat 1377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 1385605 - 1385520
Alignment:
Q  537 acaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaat 622  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||   ||||||| |||| ||| |||||||||||||||||||||    
T  1385605 acaatttcattaatgaaagtctagcaataaattaaatgtcaagaccgtagaaatataaggtggaatttcttcgatccatatgcaat 1385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 14247888 - 14247819
Alignment:
Q  258 agtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaattattcttagttttgtttggt 327  Q
    |||||||||| ||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||    
T  14247888 agtaattgaatggaaatcataatcaaaaaccgaataaacacatggaaaattatttttagttttgtttggt 14247819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 549 - 667
Target Start/End: Original strand, 34182093 - 34182212
Alignment:
Q  549 atgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcatatt-agca 647  Q
    |||||||| ||||| ||||| |||||| ||| || ||||||| ||||| ||| | | |||||||  ||||||||| ||||| | |||| |||||| |||     
T  34182093 atgaaagtgtgacagtaaattaaatgttaaggctgcagaaattcaaggtggaatctattcgatctgtatgcaatctaaattatgaagaacatatttagct 34182192  T
Q  648 aaataatgagcagcttagtt 667  Q
    |||||||||||| |||||||    
T  34182193 aaataatgagcatcttagtt 34182212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 530 - 677
Target Start/End: Original strand, 40756232 - 40756380
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  40756232 gttaaagacaaattcattaatgaaagtctgatgataaatcaaatgtcaagactgcagaaatacaaggcggagtttctttgatccatatgcaatctaaatt 40756331  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||||| || || ||||||||||||| || |||| ||||||||    
T  40756332 cttaagagcatattttgctaaataatgagcagtttggttgacttcacgc 40756380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 531 - 677
Target Start/End: Original strand, 17318528 - 17318675
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattc 630  Q
    |||||||||| |||||||||||||||||  |||| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  17318528 ttaaagacaaattcattaatgaaagtctcgcaatgaatcaaaagccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaaattc 17318627  T
Q  631 ttaagagcat-attagcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||| |||||| || |||||| |||||| |||||||||||||    
T  17318628 ttaagagcataattagctaagtaatgaacagcttggttggcttcacgc 17318675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 532 - 669
Target Start/End: Original strand, 29907639 - 29907777
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattct 631  Q
    |||| |||||||||||||  |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  29907639 taaaaacaatttcattaacaaaagtctggcaattaatcaaatgtcaagactacataaatacaaggcggagtttcttcaatccatatgcaatctaaattct 29907738  T
Q  632 taagagcata-ttagcaaaataatgagcagcttagttgg 669  Q
    ||| |||||| ||||| ||||||||||||| ||||||||    
T  29907739 taatagcatatttagctaaataatgagcagtttagttgg 29907777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 531 - 677
Target Start/End: Complemental strand, 7104213 - 7104069
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattc 630  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||    ||||| ||| |||||||||||||| |||||||||||  ||||||    
T  7104213 ttaaagacaatttcaataacgaaagtctgacaataaatcaaatgtcaagact---taaatataagacggagtttcttcgacccatatgcaatttaaattc 7104117  T
Q  631 ttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||||||||    
T  7104116 ttaagagcatatttagctaaataataagcagcttggttggcttcacgc 7104069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 530 - 676
Target Start/End: Original strand, 9741794 - 9741941
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||  ||||| |||| ||||||||||| | | |||||| |||||||||||||| |||||    
T  9741794 gttaaagacaatttcgttaacgaaagtctgataataaatcaaataccaagaatacataaatacaaggctgcgattcttcaatccatatgcaatctaaatt 9741893  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacg 676  Q
     | |||| |||| ||||| |||| |||||| |||  ||||||||||||    
T  9741894 atgaagatcatatttagctaaatgatgagctgctcggttggcttcacg 9741941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 532 - 657
Target Start/End: Original strand, 43472919 - 43473045
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattct 631  Q
    |||||||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| ||||  |||| |||||||||||||||||||| | ||| |    
T  43472919 taaagacaatttcattaatgaaggtttcacaataaattaaatgtcaagactgcagaaatataaggtagagtctcttcgatccatatgcaatctacatttt 43473018  T
Q  632 taagagcata-ttagcaaaataatgag 657  Q
      |||||||| ||||| ||||||||||    
T  43473019 gcagagcatatttagctaaataatgag 43473045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 629
Target Start/End: Original strand, 9745259 - 9745349
Alignment:
Q  539 aatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||| |||| | ||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||| |||||    
T  9745259 aatttcattaacgaaaatatgataataaatcaaatgtcaagactgcataaatacaaggctgagtttcttcgatccacatgcaatctaaatt 9745349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 530 - 677
Target Start/End: Complemental strand, 50430150 - 50430002
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||| |||||||||||||| ||||| |||||||||||||  ||  || |||  | |||||||||||||||| ||||||| |||||||||||   ||||    
T  50430150 gttaaaaacaatttcattaataaaagtttgacaataaatcatgtgctaaaactgtaaaaatacaaggcggagtctcttcgacccatatgcaatttgaatt 50430051  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
     |  ||| |||| ||||| ||||||||||||| || |||| ||||||||    
T  50430050 atgtagatcatatttagctaaataatgagcagtttggttgacttcacgc 50430002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 530 - 629
Target Start/End: Complemental strand, 44527826 - 44527727
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||||  |||||||||  ||| ||||||||||||||| |||  |||||| |||||||| || | ||||||||||||||| |||||||||| |||||    
T  44527826 gttaaagaccgtttcattaacaaaaatctgacaataaatcacatgctaagactgcagaaatataatgtggagtttcttcgatctatatgcaatctaaatt 44527727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 530 - 674
Target Start/End: Original strand, 11422573 - 11422716
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||  |||| |||||  ||||| || ||||||||| |||| ||||||| ||||  ||||||| ||||| |||||||||||||||||||| |||||    
T  11422573 gttaaagatgattttattaacaaaagtttggcaataaatcgaatgccaagactgcaga--tacaaggtggagtctcttcgatccatatgcaatctaaatt 11422670  T
Q  630 cttaagagcat-attagcaaaataatgagcagcttagttggcttca 674  Q
     | ||||||||  ||||  |||||||||||| |||  |||||||||    
T  11422671 atgaagagcatgtttagataaataatgagcaacttgattggcttca 11422716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 25144069 - 25143991
Alignment:
Q  539 aatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatat 617  Q
    |||||||||||  |||||||| |||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||    
T  25144069 aatttcattaacaaaagtctggcaataaatcaaaagtcaagactacggaaatacaaggtggggtctcttcaatccatat 25143991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 42319327 - 42319279
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaa 578  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  42319327 gttaaaaacaatttcattaacgaaagtctgataataaatcaaatgtcaa 42319279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 543 - 640
Target Start/End: Complemental strand, 42181606 - 42181509
Alignment:
Q  543 tcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcat 640  Q
    ||||||| ||||||||  |||||||||||| |  |||||| ||||||||||| | | ||| ||||| ||| |||||||||| ||||| | ||||||||    
T  42181606 tcattaacgaaagtctaccaataaatcaaaagcgaagactgcagaaatacaatgtgaagtctcttcaatctatatgcaatctaaattatgaagagcat 42181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 622
Target Start/End: Original strand, 33142992 - 33143087
Alignment:
Q  530 gttaaagacaatttcattaatgaaa---gtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaat 622  Q
    |||||| |||||||||||||| |||   ||||  ||| |||||||||| ||| ||  |||||||| ||| |||||| ||||| |||||||||||||    
T  33142992 gttaaaaacaatttcattaataaaaaaagtctagcaacaaatcaaatgccaaaaccgcagaaatataagacggagtctcttcaatccatatgcaat 33143087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 552 - 629
Target Start/End: Complemental strand, 52493616 - 52493539
Alignment:
Q  552 aaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||||||||||| || ||||||||||| || ||||||||| | || | ||||||||  |||| ||||| |||||    
T  52493616 aaagtctgacaataaaccagatgtcaagactgcaaaaatacaagacagaatctcttcgatttatatacaatctaaatt 52493539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 88; Significance: 1e-41; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 530 - 676
Target Start/End: Complemental strand, 4388 - 4241
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||| ||||||||||| ||||||||   ||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||| |||||    
T  4388 gttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaaatt 4289  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacg 676  Q
    ||||| |||||| ||||| |||||||||||||||| ||||||||||||    
T  4288 cttaaaagcatatttagctaaataatgagcagcttggttggcttcacg 4241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 1e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 530 - 676
Target Start/End: Original strand, 5007290 - 5007437
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||| ||||||||||| ||||||||   ||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||| |||||    
T  5007290 gttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaaatt 5007389  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacg 676  Q
    ||||| |||||| ||||| |||||||||||||||| ||||||||||||    
T  5007390 cttaaaagcatatttagctaaataatgagcagcttggttggcttcacg 5007437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 530 - 676
Target Start/End: Complemental strand, 17539266 - 17539119
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||| || |||||||||||||||||| |||||||| |||||  |||||| |||||||| |||||||||||| |||||||||||||||||| | |||    
T  17539266 gttaaagaaaaattcattaatgaaagtctggcaataaattaaatgcaaagactgcagaaatataaggcggagttttttcgatccatatgcaatctacatt 17539167  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacg 676  Q
    ||||||||| || ||||  |||||||||||||||| ||||||| ||||    
T  17539166 cttaagagcgtatttagttaaataatgagcagcttggttggctgcacg 17539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 534 - 675
Target Start/End: Complemental strand, 20559528 - 20559391
Alignment:
Q  534 aagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattctta 633  Q
    |||||||||||| ||| |||||||     |||||| ||||||||||||| |||||||| |||||||||||||||| | ||||||| |||| |||||||||    
T  20559528 aagacaatttcaataacgaaagtc-----ataaattaaatgtcaagactgcagaaatataaggcggagtttcttcaacccatatgtaatctaaattctta 20559434  T
Q  634 agagcata-ttagcaaaataatgagcagcttagttggcttcac 675  Q
    |||||||| ||||| ||||||| || ||||| |||||||||||    
T  20559433 agagcatatttagctaaataataagaagcttggttggcttcac 20559391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 756 - 831
Target Start/End: Original strand, 20421249 - 20421324
Alignment:
Q  756 ttgttataaatttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactaga 831  Q
    |||||||| |||||| |||||| |||||||||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  20421249 ttgttatagattttttttcttagtgtttaggtccaggggaattgatgaagtcttctaacattggcatagtactaga 20421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 533 - 623
Target Start/End: Original strand, 5953178 - 5953268
Alignment:
Q  533 aaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatc 623  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||| ||| || ||||| |||| ||||| |||| |||  ||||||||||    
T  5953178 aaagataatttcattaacgaaaatctgacaataaatcaaatgtcaaaactgcataaatataaggtggagtctctttgatttatatgcaatc 5953268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 532 - 578
Target Start/End: Complemental strand, 23497288 - 23497242
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaa 578  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||    
T  23497288 taaagacaatttcattaatgaaagtccaacaataaatcaaatgtcaa 23497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 539 - 596
Target Start/End: Complemental strand, 468046 - 467989
Alignment:
Q  539 aatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaagg 596  Q
    |||||||||||  ||||||||||||||||||||| || |||||  |||||||||||||    
T  468046 aatttcattaacaaaagtctgacaataaatcaaaagttaagaccgcagaaatacaagg 467989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 626 - 672
Target Start/End: Complemental strand, 23497237 - 23497190
Alignment:
Q  626 aattcttaagagcatatt-agcaaaataatgagcagcttagttggctt 672  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  23497237 aattcttaagagcatatttagctaaataatgagcagcttggttggctt 23497190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 569 - 640
Target Start/End: Original strand, 35024952 - 35025023
Alignment:
Q  569 caaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcat 640  Q
    |||| ||||||||| || ||||| |||| ||||| |||| |||| |||||||||||||||| | ||||||||    
T  35024952 caaaagtcaagactgcataaatataaggtggagtctctttgatctatatgcaatccaaattatgaagagcat 35025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 4e-38; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 542 - 674
Target Start/End: Original strand, 9492442 - 9492575
Alignment:
Q  542 ttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata 641  Q
    |||||||||||||||||   ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  9492442 ttcattaatgaaagtcttgtaataaatcaaatgccaagactactgaaatacaaggctgagtttcttcaatccatatgcaatctaaattcttaagagcata 9492541  T
Q  642 -ttagcaaaataatgagcagcttagttggcttca 674  Q
     ||||| |||||||| ||||||| ||||||||||    
T  9492542 tttagctaaataatgtgcagcttggttggcttca 9492575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 530 - 677
Target Start/End: Complemental strand, 8970504 - 8970356
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||| ||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| ||||||||| |||||    
T  8970504 gttaaatacaatttcattaacgaaagtctaacaataaatcaaatatcaagactatagaaatacaaggcggagtttatacgatccttatgcaatctaaatt 8970405  T
Q  630 cttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||||| |||||  |||||||||  | || |||||||||||||    
T  8970404 cttaagagcatatttagcttaataatgagatgtttggttggcttcacgc 8970356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 528 - 677
Target Start/End: Complemental strand, 19237978 - 19237828
Alignment:
Q  528 aagttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaa 627  Q
    ||||||| |||||||||||||| |||||| || |||||||||||||| |||  || || ||||| ||| |||||||||||| || |||||||||||  ||    
T  19237978 aagttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaatctgaa 19237879  T
Q  628 ttcttaagagcatatt-agcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  19237878 ttcttaagagcatattcagctaaataatgagcagcttggttggcttcacgc 19237828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 528 - 677
Target Start/End: Complemental strand, 19311162 - 19311012
Alignment:
Q  528 aagttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaa 627  Q
    ||||||| |||||||||||||| |||||| || |||||||||||||| |||  || || ||||| ||| |||||||||||| || |||||||||||  ||    
T  19311162 aagttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaatctgaa 19311063  T
Q  628 ttcttaagagcatatt-agcaaaataatgagcagcttagttggcttcacgc 677  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  19311062 ttcttaagagcatattcagctaaataatgagcagcttggttggcttcacgc 19311012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 531 - 677
Target Start/End: Complemental strand, 14154486 - 14154339
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattc 630  Q
    |||| ||||||||||||||  ||||| || | |||||| |||||| || ||| ||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  14154486 ttaatgacaatttcattaacaaaagtgtggctataaattaaatgttaaaactgcagaaatacaagatggagtttcttcaatccatatgcaatctaaattc 14154387  T
Q  631 ttaagagcata-ttagcaaaataatgagcagcttagttggcttcacgc 677  Q
    ||||||| ||| || || ||||||||||||| || |||||||||||||    
T  14154386 ttaagaggatattttgctaaataatgagcagattggttggcttcacgc 14154339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 530 - 643
Target Start/End: Original strand, 7027747 - 7027853
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcg-gagtttcttcgatccatatgcaatccaaat 628  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||| ||        ||||||||||||  |||||||||||||||||||||||||  |||    
T  7027747 gttaaagacaatttcattaatgaaaatctggcaacaaatcaaatgcca--------gaaatacaaggcctgagtttcttcgatccatatgcaatctgaat 7027838  T
Q  629 tcttaagagcatatt 643  Q
    |||||||||||||||    
T  7027839 tcttaagagcatatt 7027853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 38141439 - 38141556
Alignment:
Q  561 caataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttagcaaaataatgagca 659  Q
    ||||||||||||| || ||||| |||||||||||||| |||||||||| || |||||| |||| |||||||||||| |||| || || ||||||||| ||    
T  38141439 caataaatcaaatatcgagactgcagaaatacaaggcagagtttcttcaattcatatgtaatctaaattcttaagaacatattttgctaaataatgaaca 38141538  T
Q  660 gcttagttggcttcacgc 677  Q
    | || || ||||||||||    
T  38141539 gattggtcggcttcacgc 38141556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 562 - 677
Target Start/End: Original strand, 25481766 - 25481882
Alignment:
Q  562 aataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttagcaaaataatgagcag 660  Q
    ||||||| |||||  |||| | |||||||| ||||| |||||||||| || ||||||||||| || ||||||| |||||| ||||| |||||||||||||    
T  25481766 aataaataaaatgctaagattgcagaaatataaggcagagtttcttcaattcatatgcaatctaatttcttaatagcatatttagctaaataatgagcag 25481865  T
Q  661 cttagttggcttcacgc 677  Q
    ||| |||||||| ||||    
T  25481866 cttggttggcttgacgc 25481882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 530 - 677
Target Start/End: Original strand, 2537620 - 2537768
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||| || || ||||| |||||| ||||||||||||||| || |||||   |||||||||||| ||||| |||||||||||||||  ||| |||||    
T  2537620 gttaaagaaaaatttattaacgaaagtatgacaataaatcaaaagttaagaccgtagaaatacaaggtggagtctcttcgatccatatgtgatctaaatt 2537719  T
Q  630 cttaagagcat-attagcaaaataatgagcagcttagttggcttcacgc 677  Q
     | || | |||  ||||| |||||||||||||| | ||||| |||||||    
T  2537720 atgaaaaacatgtttagctaaataatgagcagcctggttggattcacgc 2537768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 617
Target Start/End: Original strand, 32646034 - 32646112
Alignment:
Q  539 aatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatat 617  Q
    |||||||||||  ||||||||||||||||||||| ||||| |||||  ||||| |||| || || ||||| ||||||||    
T  32646034 aatttcattaacaaaagtctgacaataaatcaaaagtcaaaactacgaaaatataaggtggggtctcttcaatccatat 32646112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 543 - 672
Target Start/End: Complemental strand, 43544109 - 43543979
Alignment:
Q  543 tcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata- 641  Q
    |||||||| ||||| ||||||||||| ||| | ||||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |     
T  43544109 tcattaataaaagtatgacaataaattaaaagccaagattgcataaatatatggcggagtttcttcgatccatatgcaatctaaattcttaagagcaaat 43544010  T
Q  642 ttagcaaaataatgagcagcttagttggctt 672  Q
    ||||| |||||||||||||||| ||||||||    
T  43544009 ttagctaaataatgagcagcttggttggctt 43543979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 547 - 659
Target Start/End: Original strand, 18746173 - 18746285
Alignment:
Q  547 taatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttag 645  Q
    ||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||| |||     
T  18746173 taatgaaagtcgggcaataaatcaaatg-caagactgcagaaatacaaggcggagtttcttcgatccatatgtaatctgaattcttaagaacatatttac 18746271  T
Q  646 caaaataatgagca 659  Q
    | ||||||||||||    
T  18746272 ctaaataatgagca 18746285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 530 - 661
Target Start/End: Original strand, 2740031 - 2740163
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||| || || ||| ||| ||  ||||||||||  ||||    
T  2740031 gttaaagacaatttcattaataaaagtctaacaataaattaaatgttaagactacaaaaatacaaagcagaattttttcaatgtatatgcaatctgaatt 2740130  T
Q  630 cttaagagcata-ttagcaaaataatgagcagc 661  Q
     | ||||||||| ||| | ||||||||||||||    
T  2740131 ataaagagcatatttaactaaataatgagcagc 2740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 766 - 832
Target Start/End: Original strand, 15607051 - 15607117
Alignment:
Q  766 tttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactagat 832  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||    
T  15607051 ttttttttcttactgtttaggtccaggggaattgatgaagtcttctgacattgtccttgtactagat 15607117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 533 - 580
Target Start/End: Original strand, 15262084 - 15262131
Alignment:
Q  533 aaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaaga 580  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||||    
T  15262084 aaagacaatttcattaaggaaaatttaacaataaatcaaatgtcaaga 15262131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 31346223 - 31346286
Alignment:
Q  539 aatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagt 602  Q
    ||||| ||||| |||||||||||||||||| ||| ||||||||| || ||||| ||||| ||||    
T  31346223 aattttattaacgaaagtctgacaataaataaaaggtcaagacttcataaatataaggctgagt 31346286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 5e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 533 - 676
Target Start/End: Original strand, 1661225 - 1661369
Alignment:
Q  533 aaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattctt 632  Q
    |||||||||||||||||| |||||||| |||||||  ||||| |||||||||| |||||||||||||||| |||| ||||||| |||||||  |||| |     
T  1661225 aaagacaatttcattaataaaagtctggcaataaaataaatgacaagactacataaatacaaggcggagtctctttgatccatttgcaatctgaattatg 1661324  T
Q  633 aagagcata-ttagcaaaataatgagcagcttagttggcttcacg 676  Q
    ||||||||| ||||  ||||||| |||| ||| ||||||||||||    
T  1661325 aagagcatatttagtgaaataattagcaacttggttggcttcacg 1661369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 533 - 623
Target Start/End: Original strand, 9490708 - 9490798
Alignment:
Q  533 aaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatc 623  Q
    |||||||| |||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||    
T  9490708 aaagacaaattcattaacgaaagtttgacaataaataaaatgtcaagactgcagaaatacaaggcgaagtttctttgatctatatgcaatc 9490798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 530 - 643
Target Start/End: Original strand, 55455653 - 55455766
Alignment:
Q  530 gttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||||||||| | ||| ||||||| | |||||||||||| |||||||||| ||||||| |||| ||| ||||||||| | |||||||||  |||||    
T  55455653 gttaaagacaattttaataacgaaagtccggcaataaatcaaacgtcaagactatagaaatataaggtggaatttcttcgacctatatgcaatataaatt 55455752  T
Q  630 cttaagagcatatt 643  Q
    ||||||||||||||    
T  55455753 cttaagagcatatt 55455766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 531 - 677
Target Start/End: Complemental strand, 46513497 - 46513350
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttctt-cgatccatatgcaatccaaatt 629  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||  ||| |||| ||||| ||||||||||  ||||    
T  46513497 ttaaagacaattttattaataaaagtct-acactaaatcaaatgtcaagactgcagaaatacaaagcaaagtctctttcgatctatatgcaatctgaatt 46513399  T
Q  630 cttaagagcatatt-agcaaaataatgagcagcttagttggcttcacgc 677  Q
     | |||| | |||| ||| |||||||||||||||| |||||||||||||    
T  46513398 atgaagaacgtatttagctaaataatgagcagcttggttggcttcacgc 46513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 531 - 654
Target Start/End: Original strand, 19624673 - 19624797
Alignment:
Q  531 ttaaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattc 630  Q
    |||||||||| ||||||||  ||||  |||||||||||||||||  ||||||  |||||||||||| | | | |||||||||||||||||||| |||||     
T  19624673 ttaaagacaaattcattaacaaaagcttgacaataaatcaaatgctaagactgtagaaatacaaggtgaaatctcttcgatccatatgcaatctaaatta 19624772  T
Q  631 ttaagagcata-ttagcaaaataat 654  Q
    | ||||||||| ||||| |||||||    
T  19624773 taaagagcatacttagctaaataat 19624797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 562 - 677
Target Start/End: Complemental strand, 31497223 - 31497107
Alignment:
Q  562 aataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcat-attagcaaaataatgagcag 660  Q
    |||||||||||||  |||||| |||||| |||||| | ||  ||||||||| |||||||||| ||||| | ||||||||  ||||| ||||||| |||||    
T  31497223 aataaatcaaatgcgaagactgcagaaacacaaggtgtagactcttcgatctatatgcaatctaaattatgaagagcatgtttagctaaataataagcag 31497124  T
Q  661 cttagttggcttcacgc 677  Q
    |||  || |||||||||    
T  31497123 cttgattagcttcacgc 31497107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 562 - 629
Target Start/End: Complemental strand, 9606655 - 9606588
Alignment:
Q  562 aataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    ||||||||||||||||||| |  |||||||| ||| ||||| |||| ||||||||||||||| |||||    
T  9606655 aataaatcaaatgtcaagattgtagaaatacgaggtggagtctctttgatccatatgcaatctaaatt 9606588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 3619546 - 3619498
Alignment:
Q  532 taaagacaatttcattaatgaaagtctgacaataaatcaaatgtcaaga 580  Q
    |||||| |||||||||||  ||| |||||||||||||||||||||||||    
T  3619546 taaagataatttcattaacaaaaatctgacaataaatcaaatgtcaaga 3619498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 562 - 629
Target Start/End: Complemental strand, 9601010 - 9600943
Alignment:
Q  562 aataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaatt 629  Q
    |||||||||||||||||||||  |||||||  ||| ||||| |||| |||||||||||| || |||||    
T  9601010 aataaatcaaatgtcaagactgtagaaatatgaggtggagtctctttgatccatatgcagtctaaatt 9600943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 562 - 676
Target Start/End: Complemental strand, 578 - 463
Alignment:
Q  562 aataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttagcaaaataatgagcag 660  Q
    ||||||||||||| ||||||| |||||||| ||||| |||||||||| || ||||||||||| |||||||||| |||||| ||||| |||||||||||||    
T  578 aataaatcaaatgccaagactgcagaaatataaggcagagtttcttcaattcatatgcaatctaaattcttaatagcatatttagctaaataatgagcag 479  T
Q  661 cttagttggcttcacg 676  Q
     || ||||||||||||    
T  478 tttggttggcttcacg 463  T

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Target: scaffold0129 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 553 - 656
Target Start/End: Original strand, 44499 - 44603
Alignment:
Q  553 aagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaagagcata-ttagcaaaat 651  Q
    ||||||| ||||||||||| | ||| |||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  44499 aagtctggcaataaatcaattttcaggactgcagaaatacaagacgaagtttcttcgatccatatgcaatctaaattcttaagagcatatttagctaaat 44598  T
Q  652 aatga 656  Q
    |||||    
T  44599 aatga 44603  T

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Target: scaffold0524 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 536 - 643
Target Start/End: Original strand, 9648 - 9755
Alignment:
Q  536 gacaatttcattaatgaaagtctgacaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatccaaattcttaag 635  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||||| || |||||||||||  ||||||||| ||| | |||||||| ||||||||| |    
T  9648 gacaatttcattaacgaaactctgacgataaatcaaatgccaagactgcataaatacaaggcaaagtttcttcaatctacatgcaatctaaattcttatg 9747  T
Q  636 agcatatt 643  Q
    | ||||||    
T  9748 atcatatt 9755  T

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Target: scaffold1801 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 563 - 622
Alignment:
Q  108 acagaaacacacacataataaaaacataactgccgataatcactatcataagcagtctaa 167  Q
    |||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||    
T  563 acagaaacacacgcataataaaaacataactgcccataattgctatcataagcagtctaa 622  T

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Target: scaffold1801; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 692 - 788
Target Start/End: Original strand, 615 - 711
Alignment:
Q  692 cagtcttacacaatcctttgttttgttccttatgatgaactgagtaagtgttt-aaattgtgcttttgttataaatttttcttcttactgtttaggtc 788  Q
    |||||| ||| |||||||||||||||| ||| | |||| |||||||| ||||| ||| ||||||||||||| | ||| || |||||||| ||||||||    
T  615 cagtctaacaaaatcctttgttttgtttcttctaatgatctgagtaactgtttaaaactgtgcttttgttaaagattatt-ttcttactctttaggtc 711  T

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Target: scaffold1118 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 784 - 844
Target Start/End: Complemental strand, 2345 - 2284
Alignment:
Q  784 aggtctaggggaattgatgaagacttctgacattggcctagtac-tagatcaaacatgctta 844  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||    
T  2345 aggtctaggggaattgatgaagtcttcttacattggcctaatacatagatcaaacatgctta 2284  T

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Target: scaffold1176 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 1853 - 1965
Alignment:
Q  284 aaactgaacaaacacaaggaaaattattcttagttttgtttggtagt-----------gtactagtatactctccctcacagatccttagtcctttttta 372  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| |           |  |||||| |||||||||||||||||||  |||||||||||    
T  1853 aaactgaataaacacaaggaaaattatttttagttttgtttggtaatttctttcatcagatctagtacactctccctcacagatcct--gtcctttttta 1950  T
Q  373 ggaaaattaattatt 387  Q
     ||||||||||||||    
T  1951 tgaaaattaattatt 1965  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 756 - 829
Target Start/End: Original strand, 111889 - 111962
Alignment:
Q  756 ttgttataaatttttcttcttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtacta 829  Q
    |||||||| ||| || || ||| |||||| ||| |||||||||||||||| ||||| |||||||||||||||||    
T  111889 ttgttatagattattttttttattgtttatgtccaggggaattgatgaagtcttctaacattggcctagtacta 111962  T

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Target: scaffold1652 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 1159 - 1209
Alignment:
Q  122 ataataaaaacataactgccgataatcactatcataagcagtctaatacaa 172  Q
    ||||||||||||||||||||  ||||| |||||||| ||||||||| ||||    
T  1159 ataataaaaacataactgcccgtaatcgctatcatatgcagtctaacacaa 1209  T

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