View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5812-Insertion-4 (Length: 817)
Name: NF5812-Insertion-4
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 9 - 805
Target Start/End: Original strand, 35408326 - 35409121
Alignment:
| Q |
9 |
attattttcgtcctcgctctggcttttgtgatcgagattgtttctgtgagttttctcnnnnnnnccttacttcatattcgtcagccttacatgtataaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
35408326 |
attattttcgtcctcgctctggcttttgtaatcaagattgtttctgtgagttttctctttgtttccttgcttcatattcgtcacccttacatgtataaaa |
35408425 |
T |
|
| Q |
109 |
acaaaatgattagattagacattaaatttcaannnnnnnn-gaagtagaattttctgttaaattgtttgtttgtttgtttg--------ctacagtgatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35408426 |
acaaaatgattagattagacattaaatttcaatttttttttgaagtagaattttctgttaaattgtttgtttgtttgtttgtttgtttgctacagtgatg |
35408525 |
T |
|
| Q |
200 |
aagatcacttaaaaaacaattataaaactagtgatactatactgcatttacgcgtacagtcacctttttgagttttgatttaatctgatgcttgattaat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408526 |
aagatcacttaaaaaacaattataaaactagtgatactagactgcatttacg--tacagtcacccttttgagttttgatttaatctgatgcttgattaat |
35408623 |
T |
|
| Q |
300 |
tctgtttactgattattttttggtgaaataaaaatccacaggctggtggtgagagatcacttcgtccaaacggtaatagttaaaacattattattaannn |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408624 |
tctgtttactgattattttttggtgaaataaaaatccacaggctggtggtgagagatcacttcgtccaaacggtaatagttaaaacattattattaattt |
35408723 |
T |
|
| Q |
400 |
nnnnnaataaaattctaaactcttcgcatcttataattaaaggaaaacctgacaaaatattaataatatgatttaattacattttgcagaatgtggtcat |
499 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408724 |
tttttaataaaattccaaactcttcgcatcttataattaaaggaaaacctgacaaaatattaataatatgatttaattacattttgcagaatgtggtcat |
35408823 |
T |
|
| Q |
500 |
gcttgtgatcatcgatgttcaaagacttctcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgtttgtgtgttccatctggaactt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408824 |
gcttgtgatcatcgatgttcaaagacttctcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgtttgtgtgttccatctggaactt |
35408923 |
T |
|
| Q |
600 |
atggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaagggaaggaaaaccaaagtgcccctaattcatgataattttttgctcccaca |
699 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
35408924 |
atggcaacaaacaagaatg---tccgtgctataacaactggaaaactaa-ggaaggaaaaccgaagtgcccctaattcatg---attttttgctcccaca |
35409016 |
T |
|
| Q |
700 |
cggctcgtttgtgagccgtgaggggttgcctctttcgnnnnnnncgtgtttactcctctgatttgggactcaagtattgcttgtgctcattgtatctcct |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35409017 |
cggctcgtttgtgagccgtgaggggttgcctctttcgtttttttcgtgtttactcctctgattt-ggactcaagtattgcttgtgctcattgtatctccg |
35409115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 682
Target Start/End: Complemental strand, 20872207 - 20872007
Alignment:
| Q |
478 |
acattttgcagaatgtggtcatgcttgtgatcatcgatgttcaaagacttctcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgt |
577 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||||||||| ||||| ||| | || || || |||||||| ||||| || || || || |||| |
|
|
| T |
20872207 |
acattttgcagaatgtggtgctgcatgtgattatcgatgttcagagactcatcatagaaaaccatgcttgttcttttgcaacaaatgctgccaaacatgt |
20872108 |
T |
|
| Q |
578 |
ttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaagggaaggaaaaccaaagtgcccctaattc |
677 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| |||| || ||| ||||||||||||||||||||| | |||||||| ||||| |||||||| || |
|
|
| T |
20872107 |
ttgtgtgtcccatccggaacttatggtaacaaggaagagtg---tccatgctataacaactggaaaactca-agaaggaaatccaaaatgcccctagttg |
20872012 |
T |
|
| Q |
678 |
atgat |
682 |
Q |
| |
|
||||| |
|
|
| T |
20872011 |
atgat |
20872007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 619
Target Start/End: Complemental strand, 16005918 - 16005862
Alignment:
| Q |
563 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgt |
619 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || || ||||| ||||||||| |
|
|
| T |
16005918 |
tgttgtgcaaagtgtttgtgtgttccatcgggaacatacggtaacaagcaagaatgt |
16005862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 676
Target Start/End: Original strand, 16095246 - 16095355
Alignment:
| Q |
563 |
tgttgtgcaaaatgtttgtgtgttccatctggaacttatggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaagggaaggaaaacca |
662 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||| ||| |||||||| |||||||||| ||| | ||||| ||| |
|
|
| T |
16095246 |
tgttgtgcaaagtgtttatgtgtcccatcgggaacatatggtaacaaggaagaatg---tccatgctataataactggaaaaataa-gaaaggaggaccc |
16095341 |
T |
|
| Q |
663 |
aagtgcccctaatt |
676 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16095342 |
aagtgcccctaatt |
16095355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 682
Target Start/End: Original strand, 9843555 - 9843732
Alignment:
| Q |
503 |
tgtgatcatcgatgttcaaagacttctcacaagaagccgtgtttgttcttctgcaaaaagtgttgtgcaaaatgtttgtgtgttccatctggaactta-t |
601 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| | |||||| || ||||| || ||||| ||||| |||||| |||||||||||| ||||| || ||||| |
|
|
| T |
9843555 |
tgtgattatcgatgttcacagactcatcatatgaagccatgcttgtttttttgcaacaagtgcagtgcaacatgtttgtgtgtcccatcagggacttaga |
9843654 |
T |
|
| Q |
602 |
ggcaacaaacaagaatgtgatccgtgctataacaactggaaaactaagggaaggaaaaccaaagtgcccctaattcatgat |
682 |
Q |
| |
|
| ||||| |||| || |||||||||||||||||||| |||| | |||||| || |||||||||||||| ||||| |
|
|
| T |
9843655 |
gtaaacaaggaagagtg---tccgtgctataacaactggacaactcaaaagaggaaatccgaagtgcccctaattgatgat |
9843732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University