View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812-Insertion-5 (Length: 750)

Name: NF5812-Insertion-5
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812-Insertion-5
NF5812-Insertion-5
[»] chr1 (4 HSPs)
chr1 (9-329)||(48977562-48977877)
chr1 (639-747)||(48976735-48976839)
chr1 (470-584)||(48977314-48977429)
chr1 (323-423)||(48977438-48977539)
[»] chr4 (8 HSPs)
chr4 (354-472)||(35130602-35130720)
chr4 (352-487)||(31351649-31351784)
chr4 (354-472)||(13538246-13538364)
chr4 (361-472)||(49479462-49479573)
chr4 (356-472)||(42657503-42657619)
chr4 (371-478)||(9460178-9460284)
chr4 (355-418)||(55967780-55967843)
chr4 (356-462)||(38415496-38415602)
[»] chr2 (3 HSPs)
chr2 (386-472)||(37123587-37123673)
chr2 (349-487)||(9198907-9199044)
chr2 (350-487)||(31068869-31069006)
[»] chr3 (7 HSPs)
chr3 (351-485)||(6757233-6757367)
chr3 (350-450)||(55009517-55009617)
chr3 (386-472)||(38745284-38745370)
chr3 (386-472)||(41259944-41260030)
chr3 (350-430)||(32594559-32594639)
chr3 (408-478)||(51829542-51829612)
chr3 (351-460)||(6459197-6459306)
[»] chr8 (3 HSPs)
chr8 (408-472)||(13147735-13147799)
chr8 (361-487)||(28300093-28300219)
chr8 (354-487)||(12959706-12959839)
[»] chr6 (5 HSPs)
chr6 (355-474)||(24618950-24619068)
chr6 (651-697)||(230756-230802)
chr6 (354-462)||(6922635-6922743)
chr6 (351-462)||(12606646-12606757)
chr6 (364-472)||(7326322-7326430)
[»] chr7 (5 HSPs)
chr7 (354-472)||(9667222-9667340)
chr7 (371-472)||(25091177-25091277)
chr7 (401-462)||(45967362-45967423)
chr7 (367-449)||(13054607-13054689)
chr7 (401-439)||(36114325-36114363)
[»] scaffold0166 (1 HSPs)
scaffold0166 (363-485)||(35865-35987)
[»] chr5 (4 HSPs)
chr5 (363-485)||(24793482-24793604)
chr5 (349-487)||(30327649-30327787)
chr5 (386-487)||(15409184-15409284)
chr5 (351-472)||(20706501-20706622)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 48977877 - 48977562
Alignment:
Q  9 gtagaggacctcgaaactgttgtggaattgttcagttccatcaaaatgtatgttgtggaggcttgcaaccatttattgttctcatgtccatttgccttta 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  48977877 gtagagggcctcgaaactgttgtggaattgttcagttccatcaaaatgtatgttatggaggcttccaaccatttattgttctcatgtccatttgccttta 48977778  T
Q  109 atgtcgaggtgtaaattcgacacatcatattgctatatcagtagtaacttggattctatgaacaacaagagataagatgatctttgaagctaagggaagg 208  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||     |||||||||    
T  48977777 atgtcgaggtgtaaattcgacacatcatatggctatatcagtactaacttggattctttgaacaacaagagataagatgatctttg-----aagggaagg 48977683  T
Q  209 gtgccaacattagtgaggtcattacaaagattatgttcatatttggggttggtttatttggacggaaggaagcataccaccgggatgcacattttcatat 308  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48977682 gtgccaacattagtaaggtcattacaaagattaggttcctatttggggttggtttatttggacggaaggaagcataccaccaggatgcacattttcatat 48977583  T
Q  309 tagtgtggtcaccttttagtg 329  Q
    | |||||||||||||||||||    
T  48977582 tggtgtggtcaccttttagtg 48977562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 639 - 747
Target Start/End: Complemental strand, 48976839 - 48976735
Alignment:
Q  639 catatctctattcctccaaaaaat-tggtttccctctctctaaatcccttataccctaaatatataaattgggtttaccaaatcaatttgttcgatcccc 737  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||     ||| | |||||||||||||||||||||||||||||    
T  48976839 catatctctattcctccaaaaaaaatggtttccctctctctaaatcccttataccctaaa-----aaaattggtttaccaaatcaatttgttcgatcccc 48976745  T
Q  738 tctctctgga 747  Q
    ||||||||||    
T  48976744 tctctctgga 48976735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 470 - 584
Target Start/End: Complemental strand, 48977429 - 48977314
Alignment:
Q  470 cttcaccaaaataaaaaatggaaggtatccctttaatacaattttgcttnnnnnnnnnnn-gataaaatatttgtaagacaatgaatatatagttttggt 568  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  48977429 cttcaccaaaataaaaaatggaaggtgttcctttaatgcaattttgcttaaaaaagaaaaagataaaatatttgtaagacaatgaatatatagttttggt 48977330  T
Q  569 gggtcaagtaatgttc 584  Q
    ||||||||||||||||    
T  48977329 gggtcaagtaatgttc 48977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 48977539 - 48977438
Alignment:
Q  323 tttagtgtatcttaattgtgttgtat-ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaa 421  Q
    |||||||||||||||||||||||||| |||| |||||| ||||| | |||||||| ||| | ||||||||||||| ||||||||||||||||||||||||    
T  48977539 tttagtgtatcttaattgtgttgtatgttgtcccgtaactgtagcttaattggtatctatccaagataatttgtgcggtggtcggggttcgaaccccaaa 48977440  T
Q  422 tt 423  Q
    ||    
T  48977439 tt 48977438  T

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Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 354 - 472
Target Start/End: Complemental strand, 35130720 - 35130602
Alignment:
Q  354 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 453  Q
    |||||| ||||||||| ||||||||||||  ||||||||||||  | || |||||||||||||||  ||||| |||||||||||| || |||||||| ||    
T  35130720 ccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaa 35130621  T
Q  454 tgtagccaccagactactt 472  Q
    | |||||||  ||||||||    
T  35130620 tctagccacatgactactt 35130602  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 352 - 487
Target Start/End: Complemental strand, 31351784 - 31351649
Alignment:
Q  352 ttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtc 451  Q
    |||||||| ||||| ||| ||||||||||||  ||||||||||||  | ||||||||||||||| ||  ||||| || |||| |||| ||||| |||||     
T  31351784 ttccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtg 31351685  T
Q  452 aatgtagccaccagactacttcaccaaaataaaaaa 487  Q
    ||| ||||||| ||||||||| | ||||| ||||||    
T  31351684 aatctagccactagactacttgatcaaaaaaaaaaa 31351649  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 472
Target Start/End: Complemental strand, 13538364 - 13538246
Alignment:
Q  354 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 453  Q
    |||||| ||||| ||| |||||||||| |  ||||||||||||| | ||  || |||||||||||||||||| ||||||| || | ||||||||||| ||    
T  13538364 ccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaa 13538265  T
Q  454 tgtagccaccagactactt 472  Q
    | ||||||| |||||||||    
T  13538264 tctagccactagactactt 13538246  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 361 - 472
Target Start/End: Original strand, 49479462 - 49479573
Alignment:
Q  361 tgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagcc 460  Q
    ||||||||| |||||||||| |  | ||||||| ||| | ||| |||||||||| ||| ||||||  |||||| |||| ||||||||||| ||| || ||    
T  49479462 tgtagttcagttggtagctatcagaaataatttatgtaggggtaggggttcgaatcccgaatttccaacttctccacacataatgtgtgtgaatctaacc 49479561  T
Q  461 accagactactt 472  Q
    || |||||||||    
T  49479562 actagactactt 49479573  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 472
Target Start/End: Original strand, 42657503 - 42657619
Alignment:
Q  356 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 455  Q
    |||| ||||| ||| |||||||||| |  ||||||||| | | | |||||| |||||||||||| |||   |||||||||||| ||||||||||| |||     
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaaccccacattctccacttcttcacacataatgtgtgtgaatt 42657602  T
Q  456 tagccaccagactactt 472  Q
    || |||| | |||||||    
T  42657603 taaccactaaactactt 42657619  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 478
Target Start/End: Original strand, 9460178 - 9460284
Alignment:
Q  371 ttggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactac 470  Q
    |||||||||| |  ||||||||||||| | ||||||||||| || |||| ||| | || |||| |||| ||||||||||| ||| ||||||| | |||||    
T  9460178 ttggtagctatcagagataatttgtgtag-ggtcggggttcaaatcccatattccccatttctccacacataatgtgtgtgaatatagccactaaactac 9460276  T
Q  471 ttcaccaa 478  Q
    || |||||    
T  9460277 ttgaccaa 9460284  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 55967780 - 55967843
Alignment:
Q  355 cgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaacccc 418  Q
    ||||| ||||| |||||||||| ||||| | |||||||||||| | || |||||||||||||||    
T  55967780 cgtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaacccc 55967843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 38415602 - 38415496
Alignment:
Q  356 gtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatg 455  Q
    |||| ||||| ||| |||||||||| | | |||||||||||  | |||| || |||||||||||||||   || ||||||| | ||||||||||| |||     
T  38415602 gtaagtgtagctcagttggtagctatcaaggataatttgtgcagaggtcaggattcgaaccccaaattctccatttcttcatacataatgtgtgtgaatc 38415503  T
Q  456 tagccac 462  Q
    |||||||    
T  38415502 tagccac 38415496  T

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Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 37123587 - 37123673
Alignment:
Q  386 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 472  Q
    |||||||||||| | | ||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| |||||||||    
T  37123587 gataatttgtgtagggttcgggattcgaaccccaaatttctcacttctccacacataatgtgtgtgaatctagccactagactactt 37123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 349 - 487
Target Start/End: Complemental strand, 9199044 - 9198907
Alignment:
Q  349 ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtc-ggggttcgaaccccaaatttctcacttcttcacatataatgtg 447  Q
    |||| |||||| ||||| ||| ||||||||||||  ||||||||||||  | || | |||||||||||| | |||||| ||||||| |||| ||||||||    
T  9199044 ttgtcccgtaagtgtagctcagttggtagctaccagagataatttgtgcagcgggctggggttcgaacctcgaatttcccacttctccacacataatgtg 9198945  T
Q  448 tgtcaatgtagccaccagactacttcaccaaaataaaaaa 487  Q
    ||  ||| ||||||| || |||||| ||||||| ||||||    
T  9198944 tg--aatttagccacgaggctacttgaccaaaaaaaaaaa 9198907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 487
Target Start/End: Complemental strand, 31069006 - 31068869
Alignment:
Q  350 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 449  Q
    |||||||||| ||||| ||| |||||||||| |   |||||||||||| | |||||| ||| |||| ||  ||| | ||||||| ||||  |||||||||    
T  31069006 tgttccgtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccacttctccacacttaatgtgtg 31068907  T
Q  450 tcaatgtagccaccagactacttcaccaaaataaaaaa 487  Q
    | ||| || |||| |||||| || || |||| ||||||    
T  31068906 tgaatctaaccactagactatttgacaaaaaaaaaaaa 31068869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 485
Target Start/End: Original strand, 6757233 - 6757367
Alignment:
Q  351 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 450  Q
    ||||||||||||||| |||| ||||||||| | | |||||||||||  ||||| | |||| |||||| | ||||||||||| | |||| |||||||||||    
T  6757233 gttccgtaaatgtagctcaactggtagctatcaaggataatttgtgcagtggttgaggtttgaaccctagatttctcacttttccacacataatgtgtgt 6757332  T
Q  451 caatgtagccaccagactacttcaccaaaataaaa 485  Q
     ||| ||||||| || ||| || ||||||| ||||    
T  6757333 aaatctagccactaggctatttaaccaaaaaaaaa 6757367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 55009517 - 55009617
Alignment:
Q  350 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 449  Q
    |||||||||| ||||| ||||||||||||||     |||||||||||| | |  |||||||||||||||  ||||||||||||| || | ||||||||||    
T  55009517 tgttccgtaagtgtagctcaattggtagctattagggataatttgtgtagagaccggggttcgaaccccggatttctcacttctccatacataatgtgtg 55009616  T
Q  450 t 450  Q
    |    
T  55009617 t 55009617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 38745370 - 38745284
Alignment:
Q  386 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 472  Q
    |||||||||||  | ||||||| |||||||||| |||| | ||||||| |||| | ||||||||| ||| ||||||| |||||||||    
T  38745370 gataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacacaaaatgtgtgtgaatctagccactagactactt 38745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 41260030 - 41259944
Alignment:
Q  386 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 472  Q
    |||||||||||| | || |||||||||| |||| |||| | ||||||| |||| ||||||||||| ||| ||||||| || ||||||    
T  41260030 gataatttgtgtaggggccggggttcgacccccgaattccccacttctccacacataatgtgtgtgaatctagccactaggctactt 41259944  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 32594559 - 32594639
Alignment:
Q  350 tgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcact 430  Q
    |||||||||| ||||||||| ||||||| ||      ||||||||||| |||||||||||||||||||| |||||| ||||    
T  32594559 tgttccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaaccccgaatttcccact 32594639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 51829612 - 51829542
Alignment:
Q  408 gttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactacttcaccaa 478  Q
    |||||||||||| ||| ||||||||| |||| ||||||| ||| ||| ||||||| | ||||||| |||||    
T  51829612 gttcgaaccccagattcctcacttctccacacataatgtatgtgaatctagccactatactacttgaccaa 51829542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 460
Target Start/End: Complemental strand, 6459306 - 6459197
Alignment:
Q  351 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 450  Q
    ||||||||||||||  |||| | ||||||||  | |||||||||||   |||| |||||| |||||||| |||| |||||| | || | |||||||||||    
T  6459306 gttccgtaaatgtaactcaactagtagctactaaggataatttgtgcaatggttggggtttgaaccccagatttttcacttttccatacataatgtgtgt 6459207  T
Q  451 caatgtagcc 460  Q
     ||| |||||    
T  6459206 aaatctagcc 6459197  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 13147799 - 13147735
Alignment:
Q  408 gttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactactt 472  Q
    |||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||||    
T  13147799 gttcgaaccccaaatttcacacttcttcacacataatgtgtgtgaatctagccactagactactt 13147735  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 28300093 - 28300219
Alignment:
Q  361 tgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagcc 460  Q
    ||||| ||| |||||||||||| | |||||||||||  | || |||||||||||||||  ||| | ||||||| || | ||||||||||| ||| |||||    
T  28300093 tgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatctagcc 28300192  T
Q  461 accagactacttcaccaaaataaaaaa 487  Q
    || || |||||| ||||||| ||||||    
T  28300193 acaaggctacttgaccaaaaaaaaaaa 28300219  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 487
Target Start/End: Original strand, 12959706 - 12959839
Alignment:
Q  354 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 453  Q
    |||||| ||||| ||| |||||||||| |   ||||| |||||  | ||| ||||||||||||||| ||| | ||||| ||| |||||||||||||| ||    
T  12959706 ccgtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccacttattcgcatataatgtgtgtgaa 12959805  T
Q  454 tgtagccaccagactacttcaccaaaataaaaaa 487  Q
    | ||||||| |  |||||| || |||| ||||||    
T  12959806 tctagccacgaagctacttgacaaaaacaaaaaa 12959839  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 474
Target Start/End: Complemental strand, 24619068 - 24618950
Alignment:
Q  355 cgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaat 454  Q
    ||||||||||| ||| |||||||||||  |||||||||| ||  |||| ||| ||||||||||| ||||||  |||||| || ||||||||||||| ||     
T  24619068 cgtaaatgtagctcagttggtagctactaaagataatttatgcagtggccggagttcgaacccc-aatttcctacttctccatatataatgtgtgtgaac 24618970  T
Q  455 gtagccaccagactacttca 474  Q
    |||||||| | |||||||||    
T  24618969 gtagccactatactacttca 24618950  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 697
Target Start/End: Complemental strand, 230802 - 230756
Alignment:
Q  651 cctccaaaaaattggtttccctctctctaaatcccttataccctaaa 697  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  230802 cctccaaaaaattggtttccctctctctaaatcccttatactctaaa 230756  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 462
Target Start/End: Complemental strand, 6922743 - 6922635
Alignment:
Q  354 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 453  Q
    |||||| ||||||||| ||||||||||||    ||||||||||  | ||||||||||| ||| ||| ||| | ||||||| |||||||||||||||| ||    
T  6922743 ccgtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctccacatataatgtgtgtgaa 6922644  T
Q  454 tgtagccac 462  Q
    | |||||||    
T  6922643 tctagccac 6922635  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 462
Target Start/End: Original strand, 12606646 - 12606757
Alignment:
Q  351 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 450  Q
    |||| |||| ||||| ||| |||||||||||    |||||||||||| |   ||| ||||||||||||| ||| | ||||||||||||||||||||||||    
T  12606646 gttctgtaagtgtagctcagttggtagctactagggataatttgtgtaggaatcgaggttcgaaccccagattccccacttcttcacatataatgtgtgt 12606745  T
Q  451 caatgtagccac 462  Q
     ||| |||||||    
T  12606746 gaatctagccac 12606757  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 472
Target Start/End: Complemental strand, 7326430 - 7326322
Alignment:
Q  364 agttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccacc 463  Q
    |||||| ||||||||||||   ||||||||| |  | ||||||| ||||||||| | ||| | ||||||| |||| ||||||||||| ||| |||||||     
T  7326430 agttcagttggtagctaccagggataatttgagcaggggtcgggtttcgaaccctagattccccacttctccacacataatgtgtgtgaatttagccact 7326331  T
Q  464 agactactt 472  Q
    |||||||||    
T  7326330 agactactt 7326322  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 354 - 472
Target Start/End: Complemental strand, 9667340 - 9667222
Alignment:
Q  354 ccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaa 453  Q
    |||||| ||||| ||| |||||||||| |  ||||||||||||| | ||  || |||||||||||||||||| ||||||| || | ||||||||||| ||    
T  9667340 ccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaa 9667241  T
Q  454 tgtagccaccagactactt 472  Q
    |  |||||| |||||||||    
T  9667240 tccagccactagactactt 9667222  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 25091177 - 25091277
Alignment:
Q  371 ttggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactac 470  Q
    ||||||||||||   |||||||||||  | ||||| ||||| ||| ||| |||| ||||||||||||| ||||||||||| ||| ||||||| |||||||    
T  25091177 ttggtagctaccagggataatttgtgcaggggtcgaggttcaaactccagattt-tcacttcttcacacataatgtgtgtgaatctagccactagactac 25091275  T
Q  471 tt 472  Q
    ||    
T  25091276 tt 25091277  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 401 - 462
Target Start/End: Complemental strand, 45967423 - 45967362
Alignment:
Q  401 ggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 462  Q
    |||||||||||||||||| |||| ||||||| |||||| ||||||||||| ||| |||||||    
T  45967423 ggtcggggttcgaaccccgaattcctcactttttcacacataatgtgtgtgaatctagccac 45967362  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 13054607 - 13054689
Alignment:
Q  367 tcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtg 449  Q
    ||||||||||||||||   || ||| ||||  | || |||||||||||||||| ||||| ||||||| |||| ||||||||||    
T  13054607 tcaattggtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgtgtg 13054689  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 36114363 - 36114325
Alignment:
Q  401 ggtcggggttcgaaccccaaatttctcacttcttcacat 439  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  36114363 ggtcggggttcgaaccccaaatatctcacttctccacat 36114325  T

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Target: scaffold0166 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 485
Target Start/End: Original strand, 35865 - 35987
Alignment:
Q  363 tagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 462  Q
    ||||||| |||||||||| |  ||||||||||||  | ||||||||| ||||||||| ||||| || ||||  ||| ||||||| ||| ||| |||||||    
T  35865 tagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccac 35964  T
Q  463 cagactacttcaccaaaataaaa 485  Q
     ||||||||| || |||| ||||    
T  35965 tagactacttgacaaaaaaaaaa 35987  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 485
Target Start/End: Original strand, 24793482 - 24793604
Alignment:
Q  363 tagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccac 462  Q
    ||||||| |||||||||| |  ||||||||||||  | ||||||||| ||||||||| ||||| || ||||  ||| ||||||| ||| ||| |||||||    
T  24793482 tagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatctagccac 24793581  T
Q  463 cagactacttcaccaaaataaaa 485  Q
     ||||||||| || |||| ||||    
T  24793582 tagactacttgacaaaaaaaaaa 24793604  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 487
Target Start/End: Original strand, 30327649 - 30327787
Alignment:
Q  349 ttgttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgt 448  Q
    ||||||| ||| ||||| ||| |||||||||| |  ||||||||| ||  | || ||||||||||||||| ||||   ||||||| |||| ||||| |||    
T  30327649 ttgttccataagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacacataatatgt 30327748  T
Q  449 gtcaatgtagccaccagactacttcaccaaaataaaaaa 487  Q
    || ||| ||||||| | ||||||| | ||||| ||||||    
T  30327749 gtgaatctagccactaaactacttgatcaaaaaaaaaaa 30327787  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 487
Target Start/End: Original strand, 15409184 - 15409284
Alignment:
Q  386 gataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgtcaatgtagccaccagactacttcaccaaaataaaa 485  Q
    |||||||||||| | || ||||||| ||| |||| ||| | |||||||| ||| ||||||||||| ||| ||||||| ||||||||| || |||| ||||    
T  15409184 gataatttgtgtag-ggccggggtttgaatcccagattccccacttctttacacataatgtgtgtgaatttagccactagactacttgacaaaaaaaaaa 15409282  T
Q  486 aa 487  Q
    ||    
T  15409283 aa 15409284  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 20706501 - 20706622
Alignment:
Q  351 gttccgtaaatgtagttcaattggtagctaccgaagataatttgtgtggtggtcggggttcgaaccccaaatttctcacttcttcacatataatgtgtgt 450  Q
    |||| |||||||||| ||| |||||||||||| | |||||||||||  | ||||  |||| |||||  | ||||  ||||||| ||||  ||||||||||    
T  20706501 gttctgtaaatgtagctcagttggtagctaccaacgataatttgtgcagaggtcaaggtttgaaccttagattttccacttctccacacgtaatgtgtgt 20706600  T
Q  451 caatgtagccaccagactactt 472  Q
     ||| || ||||||| ||||||    
T  20706601 gaatctaaccaccagcctactt 20706622  T

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