View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5812-Insertion-6 (Length: 566)
Name: NF5812-Insertion-6
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 28313133 - 28313502
Alignment:
| Q |
9 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
108 |
Q |
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| T |
28313133 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
28313232 |
T |
|
| Q |
109 |
acaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatg |
208 |
Q |
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| T |
28313233 |
acaatggtaaaatggggaattgacaacgttgtgaactttttaacaccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatt |
28313332 |
T |
|
| Q |
209 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
308 |
Q |
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| T |
28313333 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
28313432 |
T |
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| Q |
309 |
acgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaattaaattatg |
378 |
Q |
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| T |
28313433 |
acgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaattaaattatg |
28313502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 484 - 566
Target Start/End: Original strand, 28313642 - 28313724
Alignment:
| Q |
484 |
agagtgtttcggaagcaatcgttaacaagacccttagattaaataagaaaagtattttttgcatcatttttgcatctttctgg |
566 |
Q |
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| T |
28313642 |
agagtgtttcggaagcaattgttaacaagacccttggattaaataagaaaagtactttttgcatcatttttgtatctttctgg |
28313724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 28316273 - 28316636
Alignment:
| Q |
9 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
108 |
Q |
| |
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|||||||||||||||||| |||||||| || || ||| ||||||| ||||| || |||||||||||||||| || ||||||| | | ||||| || |
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| T |
28316273 |
tcaaaatcaaattgttgccgttgaatttgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatataaattccattcgttcgcta |
28316372 |
T |
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| Q |
109 |
acaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatg |
208 |
Q |
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| T |
28316373 |
caaacggaaagatggggaattgagagtggtgataacgttttaacaacggtggttgctacaattaattatgatgctctttcacaaaggttaagcgttgttg |
28316472 |
T |
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| Q |
209 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
308 |
Q |
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||| ||| ||||| |||||| ||||||||| || | | ||||||||||||| | ||||||| || |||||| ||||||||||||||| | |||||| |
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| T |
28316473 |
taaattcggtgaatagaactacaattagcctttcagaggtgattgatttgagggcatttctgccggaatgggttatcgttgggttctctggtgccacggg |
28316572 |
T |
|
| Q |
309 |
acgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaattaa |
372 |
Q |
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| || | |||||||||| | ||||||||||||||| ||||| ||||| | | ||||||||||| |
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| T |
28316573 |
aggatttgttgaaacacacaagattctttcttggaatttcaactctagcaagaattagaattaa |
28316636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 28320823 - 28320925
Alignment:
| Q |
252 |
tgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagc |
351 |
Q |
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| T |
28320823 |
tgatttgaggggatatctgcctgattggattatcgttgggttctccggtgccacgggaggattggttgaaacacacaagattctttcttggactttcagc |
28320922 |
T |
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| Q |
352 |
tct |
354 |
Q |
| |
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||| |
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| T |
28320923 |
tct |
28320925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 28320583 - 28320747
Alignment:
| Q |
12 |
aaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggtaaca |
111 |
Q |
| |
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||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||||||||||||||| ||| |||||| | |||| | |||| |
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| T |
28320583 |
aaatcaaattgttgcagttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattccatccgttccgaaaca |
28320682 |
T |
|
| Q |
112 |
atggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagtta |
176 |
Q |
| |
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| || | |||||||||||| | ||||| || | |||| | ||||||||||||| |||||||| |
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| T |
28320683 |
acggagagatggggaattgatagtgttgagagcaatttatcaacggtggttgctacagttagtta |
28320747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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