View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812-Insertion-7 (Length: 288)

Name: NF5812-Insertion-7
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812-Insertion-7
NF5812-Insertion-7
[»] chr5 (6 HSPs)
chr5 (18-288)||(13872187-13872457)
chr5 (18-125)||(13884479-13884584)
chr5 (18-91)||(12957646-12957719)
chr5 (132-198)||(13876670-13876736)
chr5 (224-288)||(13876911-13876975)
chr5 (21-94)||(13874529-13874605)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 13872187 - 13872457
Alignment:
Q  18 gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13872187 gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatggggccattgattatttgtagcgatgcctggtata 13872286  T
Q  118 aacaaaaagtttaaaagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataag 217  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872287 aacaaaaattttaaaagtgcttaatcaaactatttatccattctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataag 13872386  T
Q  218 tgcttgaaacgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaataatttac 288  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13872387 tgcttgaaacgaacatttttaatgtcacccatgtacacatacacgataaaatcttctaaagaataatttac 13872457  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 13884479 - 13884584
Alignment:
Q  18 gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtata 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||| || ||||  | |||||    
T  13884479 gacaattaccaagaacttcaacaagtgtagtgatcacttcccataaacacaattaacaaggaaatgaagccattaattacttgcagtgatg--tcgtata 13884576  T
Q  118 aacaaaaa 125  Q
    ||||||||    
T  13884577 aacaaaaa 13884584  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12957719 - 12957646
Alignment:
Q  18 gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccatt 91  Q
    ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  12957719 gacaattaccaagaacttcaaaaagtgtagtaatcacttcccataaacacaattaacaaggaaatgaggccatt 12957646  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 13876670 - 13876736
Alignment:
Q  132 aagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttct 198  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13876670 aagtgtttaatcaaactatttatccatcttactaattttaaatttgtttcccttaatgcaaacttct 13876736  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 13876911 - 13876975
Alignment:
Q  224 aaacgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaataatttac 288  Q
    |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  13876911 aaacgaacctttttcatgccacccatgtatacatacacaataaaatcttctaaagaatattttac 13876975  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 13874529 - 13874605
Alignment:
Q  21 aattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaa-ggaaatgaggccattgat 94  Q
    ||||||||||||||||| ||||||| | ||||||||   || ||||||||||||||||| | ||||||||||||||||    
T  13874529 aattaccaagaacttca-caagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgat 13874605  T

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