View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5812_high_1 (Length: 389)
Name: NF5812_high_1
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 28313133 - 28313495
Alignment:
| Q |
17 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28313133 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
28313232 |
T |
|
| Q |
117 |
acaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatg |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28313233 |
acaatggtaaaatggggaattgacaacgttgtgaactttttaacaccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatt |
28313332 |
T |
|
| Q |
217 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28313333 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
28313432 |
T |
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| Q |
317 |
acgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaatta |
379 |
Q |
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| T |
28313433 |
acgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaatta |
28313495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 28316273 - 28316619
Alignment:
| Q |
17 |
tcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggta |
116 |
Q |
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|||||||||||||||||| |||||||| || || ||| ||||||| ||||| || |||||||||||||||| || ||||||| | | ||||| || |
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| T |
28316273 |
tcaaaatcaaattgttgccgttgaatttgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatataaattccattcgttcgcta |
28316372 |
T |
|
| Q |
117 |
acaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagttacgaggcactttcacaccagttaaatgtagatg |
216 |
Q |
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|| || || |||||||||||| | || || ||| ||||||| ||||||||||||| ||| ||| || || |||||||| ||||| || | || |
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| T |
28316373 |
caaacggaaagatggggaattgagagtggtgataacgttttaacaacggtggttgctacaattaattatgatgctctttcacaaaggttaagcgttgttg |
28316472 |
T |
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| Q |
217 |
taagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacggg |
316 |
Q |
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||| ||| ||||| |||||| ||||||||| || | | ||||||||||||| | ||||||| || |||||| ||||||||||||||| | |||||| |
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| T |
28316473 |
taaattcggtgaatagaactacaattagcctttcagaggtgattgatttgagggcatttctgccggaatgggttatcgttgggttctctggtgccacggg |
28316572 |
T |
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| Q |
317 |
acgaatggttgaaacactcgagattctttcttggactttcagctcta |
363 |
Q |
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| || | |||||||||| | ||||||||||||||| ||||| ||||| |
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| T |
28316573 |
aggatttgttgaaacacacaagattctttcttggaatttcaactcta |
28316619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 28320823 - 28320925
Alignment:
| Q |
260 |
tgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagc |
359 |
Q |
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||||||||||| | |||||| || || ||| |||||||||||| || | ||||||| || |||||||||||| | ||||||||||||||||||||||| |
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| T |
28320823 |
tgatttgaggggatatctgcctgattggattatcgttgggttctccggtgccacgggaggattggttgaaacacacaagattctttcttggactttcagc |
28320922 |
T |
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| Q |
360 |
tct |
362 |
Q |
| |
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||| |
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| T |
28320923 |
tct |
28320925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 28320583 - 28320747
Alignment:
| Q |
20 |
aaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggtaaca |
119 |
Q |
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||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||||||||||||||| ||| |||||| | |||| | |||| |
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| T |
28320583 |
aaatcaaattgttgcagttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattccatccgttccgaaaca |
28320682 |
T |
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| Q |
120 |
atggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagtta |
184 |
Q |
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| || | |||||||||||| | ||||| || | |||| | ||||||||||||| |||||||| |
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| T |
28320683 |
acggagagatggggaattgatagtgttgagagcaatttatcaacggtggttgctacagttagtta |
28320747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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