View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812_high_3 (Length: 340)

Name: NF5812_high_3
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812_high_3
NF5812_high_3
[»] scaffold0606 (2 HSPs)
scaffold0606 (63-324)||(5265-5526)
scaffold0606 (8-66)||(5562-5620)
[»] chr3 (13 HSPs)
chr3 (71-320)||(54285066-54285315)
chr3 (71-249)||(12411997-12412176)
chr3 (71-232)||(19643547-19643708)
chr3 (71-201)||(7920866-7920996)
chr3 (221-308)||(7920990-7921076)
chr3 (84-216)||(19225631-19225761)
chr3 (181-231)||(1464151-1464201)
chr3 (137-231)||(19658176-19658270)
chr3 (137-229)||(17762288-17762381)
chr3 (137-229)||(19063608-19063701)
chr3 (182-230)||(12410047-12410095)
chr3 (183-231)||(17769238-17769286)
chr3 (183-231)||(19070539-19070587)
[»] scaffold1681 (1 HSPs)
scaffold1681 (69-320)||(1107-1357)
[»] chr7 (18 HSPs)
chr7 (63-320)||(11376607-11376863)
chr7 (130-309)||(20598116-20598294)
chr7 (75-309)||(15304391-15304624)
chr7 (105-309)||(9065288-9065496)
chr7 (97-226)||(12598107-12598235)
chr7 (69-320)||(16812683-16812931)
chr7 (125-320)||(19417034-19417217)
chr7 (133-232)||(10254524-10254623)
chr7 (193-300)||(3779094-3779200)
chr7 (132-308)||(9802960-9803136)
chr7 (133-232)||(9804932-9805031)
chr7 (125-232)||(24811284-24811391)
chr7 (133-225)||(9762551-9762643)
chr7 (181-231)||(2501281-2501331)
chr7 (184-230)||(11572447-11572493)
chr7 (134-231)||(1878441-1878538)
chr7 (181-229)||(15871328-15871376)
chr7 (171-231)||(23125803-23125863)
[»] chr2 (6 HSPs)
chr2 (115-320)||(14867037-14867242)
chr2 (69-308)||(27745895-27746133)
chr2 (63-238)||(26815777-26815952)
chr2 (87-249)||(19498830-19498992)
chr2 (123-308)||(33240463-33240648)
chr2 (123-308)||(33248384-33248569)
[»] chr6 (9 HSPs)
chr6 (72-320)||(14079585-14079833)
chr6 (63-281)||(16739991-16740208)
chr6 (71-295)||(27988567-27988792)
chr6 (69-320)||(13242998-13243249)
chr6 (72-300)||(31719757-31719984)
chr6 (115-231)||(14758166-14758282)
chr6 (14-66)||(16740244-16740297)
chr6 (15-64)||(12399019-12399068)
chr6 (195-231)||(15478031-15478067)
[»] chr1 (7 HSPs)
chr1 (73-309)||(23917613-23917848)
chr1 (132-309)||(23549991-23550168)
chr1 (133-255)||(10153862-10153983)
chr1 (137-230)||(18209006-18209098)
chr1 (132-231)||(22640144-22640243)
chr1 (181-232)||(25399234-25399285)
chr1 (186-308)||(31359112-31359234)
[»] chr8 (6 HSPs)
chr8 (130-309)||(15598531-15598709)
chr8 (133-306)||(24635100-24635273)
chr8 (216-322)||(17879401-17879507)
chr8 (133-231)||(17687837-17687935)
chr8 (73-152)||(17879590-17879669)
chr8 (183-231)||(27739737-27739785)
[»] scaffold0340 (1 HSPs)
scaffold0340 (69-303)||(17753-17986)
[»] chr5 (3 HSPs)
chr5 (63-306)||(12078648-12078886)
chr5 (7-66)||(12078922-12078982)
chr5 (148-232)||(26118808-26118892)
[»] chr4 (6 HSPs)
chr4 (71-320)||(10328471-10328719)
chr4 (69-308)||(15193463-15193687)
chr4 (71-232)||(32468613-32468773)
chr4 (141-308)||(23087471-23087638)
chr4 (181-231)||(17526586-17526636)
chr4 (148-232)||(24619508-24619592)
[»] scaffold0083 (1 HSPs)
scaffold0083 (116-310)||(49653-49846)


Alignment Details
Target: scaffold0606 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 5526 - 5265
Alignment:
Q  63 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5526 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 5427  T
Q  163 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  5426 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctggcactctt 5327  T
Q  263 caaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagactttac 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5326 caaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcataagactttac 5265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5620 - 5562
Alignment:
Q  8 ataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtcact 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5620 ataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtcact 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 54285066 - 54285315
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 170  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||| ||||| ||||||||||||  | |||||||||    
T  54285066 ccactacctccaacattctcatgtgcattgtacgaagctacaactatgtcttctttggaaaagaacggataattatttatcaaggaaatgtttcaaaatc 54285165  T
Q  171 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtct 270  Q
    |||| |||| ||||| ||||  |||||||||||||||| |||| || ||||||||||||||| ||  | |||| |||||||||   ||||||||||||||    
T  54285166 attcattcataggactttaatcaaatcaagcaacaaatcaatgttgattgatcaagcttctctaacaactctaatgatgcgctgacactcttcaaagtct 54285265  T
Q  271 cttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    || |||||| | ||||||||||||||||||||||||||||| ||| ||||    
T  54285266 ctattcaacttctatataaaggattgaagacttgaagaaataacatgact 54285315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 71 - 249
Target Start/End: Original strand, 12411997 - 12412176
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 170  Q
    |||||||||||| ||||||||| |||| |||| |||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| || |||| ||||    
T  12411997 ccactacctccaacattctcatatgcaatgtacgaagctacaactatgtctcctatggaaaagaacggttaattccttatcaaggaaaggtttcagaatc 12412096  T
Q  171 att-ctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatg 249  Q
    ||| ||||||  |||||||||| |||||||||||||||| |||||||| |||||||||| ||| || || |||| |||||    
T  12412097 attcctttcattggacattaaccaaatcaagcaacaaatcaatgatgtatgatcaagctactctaacgactctaatgatg 12412176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 19643547 - 19643708
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 170  Q
    ||||||||| || ||||||||| |||| |||| ||||||||  ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||    
T  19643547 ccactaccttcaacattctcatatgcaatgtacgaagctacagctgtgtctcctttggaaaagaacggttaactccttatcaacgaaaggattcaaaatc 19643646  T
Q  171 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    |||| |||| ||||||||||| ||||| | | | |||| ||||||| ||||||||| |||||    
T  19643647 attccttcataggacattaaccaaatccatccataaatcaatgatgcttgatcaagtttctc 19643708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 7920866 - 7920996
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 170  Q
    |||||| ||||| ||||| ||||||||||||| ||||||||   ||||||| | || ||||||||| |||||||| |||||||||||  ||||||||||     
T  7920866 ccactatctccaacattcccatgtgcattgtacgaagctacatatgtgtcttcatttgaaaagaacagttaattccttatcaaggaaatgattcaaaatt 7920965  T
Q  171 attctttcacaggacattaacgaaatcaagc 201  Q
    |||| |||| |  |||||||| |||||||||    
T  7920966 attccttcataatacattaaccaaatcaagc 7920996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 7920990 - 7921076
Alignment:
Q  221 atcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    |||||||||||| ||||| ||||| ||||| ||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7920990 atcaagcttctcaaatgactctat-gatgcactgacactcttcaacgtctcttttcaacctctatataaaggattgaagacttgaaga 7921076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 19225761 - 19225631
Alignment:
Q  84 cattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacagg 183  Q
    ||||||||||| || |||| |||||||  | ||||||||||||| ||| ||  ||||||||| ||||||||| |  | |||||| |||||| |||| |||    
T  19225761 cattctcatgtacaatgtacgaagctaa-attgtgtctcctttgaaaatgat-ggttaattccttatcaagggaatgtttcaaagtcattcattcatagg 19225664  T
Q  184 acattaacgaaatcaagcaacaaattaatgatg 216  Q
    | |||||| |||||||||||||||| |||||||    
T  19225663 atattaactaaatcaagcaacaaatcaatgatg 19225631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 1464201 - 1464151
Alignment:
Q  181 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||||| |||||||||||||||| |||| || ||||||||||||||    
T  1464201 aggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttct 1464151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 19658176 - 19658270
Alignment:
Q  137 ggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    |||||||||  ||||||||||||| ||  |||| ||||  ||  ||||||||||| | |||||| ||||||| | ||||| ||||||||||||||    
T  19658176 ggttaattccctatcaaggaatggttttcaaattattccctcctaggacattaaccatatcaaggaacaaatcactgatgattgatcaagcttct 19658270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 17762288 - 17762381
Alignment:
Q  137 ggttaattctttat-caaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 229  Q
    |||||||||| ||| ||||||||| |||  |||| |||| |||  |||| |||||||||||||||||||| || | || || ||||||||||||    
T  17762288 ggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacagatcattggtgattgatcaagctt 17762381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 19063608 - 19063701
Alignment:
Q  137 ggttaattctttat-caaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 229  Q
    |||||||||| ||| ||||||||| |||  |||| |||| |||  |||| |||||||||||||||||||| || | || || ||||||||||||    
T  19063608 ggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacagatcattggtgattgatcaagctt 19063701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 12410047 - 12410095
Alignment:
Q  182 ggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 230  Q
    |||||||||| | |||||||||||||| |||| || |||||||||||||    
T  12410047 ggacattaaccagatcaagcaacaaatcaatgttgattgatcaagcttc 12410095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 17769238 - 17769286
Alignment:
Q  183 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  17769238 gacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 17769286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 19070539 - 19070587
Alignment:
Q  183 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  19070539 gacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 19070587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 320
Target Start/End: Original strand, 1107 - 1357
Alignment:
Q  69 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 168  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||     
T  1107 ctccactacctccaacattctcatgtgcattgtacgaagctacaactgtgtctccattggaaaagaacgatgaattccttatcaaggaaaggattcaaac 1206  T
Q  169 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 268  Q
    ||||||||| | | ||||||||| ||||||||||| |||| |||| ||  |||||||||||||| ||||| ||| ||||||| ||   || |||||| ||    
T  1207 tcattcttttatatgacattaaccaaatcaagcaagaaatcaatgttgaatgatcaagcttctcaaatgactct-ttgatgcactgacacgcttcaacgt 1305  T
Q  269 ctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    |||||||| |||| |||||||||||||| |||||||||||| | ||||||||    
T  1306 ctcttttctacctctatataaaggattgcagacttgaagaatttacaagact 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 63 - 320
Target Start/End: Complemental strand, 11376863 - 11376607
Alignment:
Q  63 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 162  Q
    ||||| ||||||||| |||| ||||||  |||||||||||||| |||||   ||||||||| ||||||||||||||||||||| || ||||||||  |||    
T  11376863 cactacctccactacatccaacattcttgtgtgcattgtatgaggctacagttgtgtctccattggaaaagaacggttaattccttgtcaaggaaatgat 11376764  T
Q  163 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 262  Q
    ||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||   |||||| ||||||| ||||| ||| |||||||||| | ||||||    
T  11376763 tcaaattcattccttcataggacattaaccaaatcaagcaacaaatcaatgatcaatgatcaggcttctcaaatgactct-ttgatgcgctggcactctt 11376665  T
Q  263 caaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    ||  ||||||||||||||| | ||||||||||||||||| |||||| |||||||||||    
T  11376664 catcgtctcttttcaacctctttataaaggattgaagacgtgaagatatcacaagact 11376607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 20598294 - 20598116
Alignment:
Q  130 aaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 229  Q
    |||||||||||||||| |||||| |||| ||||||||| |||||| |||||| ||||||||| |||||||||||||||| |||| ||  |||||||||||    
T  20598294 aaagaacggttaattccttatcagggaaaggattcaaattcattccttcacatgacattaactaaatcaagcaacaaatcaatgttgaatgatcaagctt 20598195  T
Q  230 ctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 309  Q
    ||| ||||| ||| |||||||| ||  |||| |||| |||||||||| |||| | ||||||| |||||||||||||||||    
T  20598194 ctcaaatgactct-ttgatgcgttatcactcatcaacgtctcttttctacctctttataaagtattgaagacttgaagaa 20598116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 15304624 - 15304391
Alignment:
Q  75 tacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattc 174  Q
    |||||||| ||||| ||||| |||| ||  |||||||   ||||||||  ||| |||| |||||||||||| |||||||| || ||||||||| ||||||    
T  15304624 tacctccaacattcccatgttcattatacaaagctacagttgtgtctctattgaaaaataacggttaattccttatcaagaaaaggattcaaattcattc 15304525  T
Q  175 tttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattcta-ttgatgcgctagtactcttcaaagtctctt 273  Q
     |||| ||||||  ||| |||||||||||||||| |||| ||   ||||||| ||||| |||||  ||| |||||||| |   |||||||||||||||||    
T  15304524 cttcataggacaccaactaaatcaagcaacaaatcaatgttggaagatcaagtttctcaaatga--ctacttgatgcgttgacactcttcaaagtctctt 15304427  T
Q  274 ttcaacctttatataaaggattgaagacttgaagaa 309  Q
    ||| |||| |||||||||||||||||||||||||||    
T  15304426 ttctacctctatataaaggattgaagacttgaagaa 15304391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 9065496 - 9065288
Alignment:
Q  105 aagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaac 204  Q
    ||||||| | |||||||| ||| |||||||||| ||||||||||||||| ||| || |||||| |||||  || | ||||||||||| |||||||||| |    
T  9065496 aagctacaaatgtgtctc-tttagaaaagaacgattaattctttatcaaagaaaggtttcaaattcatttcttgataggacattaaccaaatcaagcagc 9065398  T
Q  205 aaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctctttt-----caacctttatataaaggattgaag 299  Q
    |||| ||||||||||||||||| ||||| || || |||| ||||||| | | |||||||||  ||||||||     ||||||  ||||||||||||||||    
T  9065397 aaatcaatgatgtttgatcaagtttctctaacgactctaatgatgcgttggcactcttcaacctctcttttttctacaacctcaatataaaggattgaag 9065298  T
Q  300 acttgaagaa 309  Q
    ||||||||||    
T  9065297 acttgaagaa 9065288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 12598107 - 12598235
Alignment:
Q  97 attgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaat 196  Q
    |||||| |||||||| |||||||||| ||| ||||| ||| |||||||| ||||||||||| || |||||| |||||| |||| |  |||||||| ||||    
T  12598107 attgtacgaagctacaactgtgtctc-tttagaaaataacagttaattccttatcaaggaaaggtttcaaattcattccttcataaaacattaaccaaat 12598205  T
Q  197 caagcaacaaattaatgatgtttgatcaag 226  Q
    |||||||||||| |||||||||||||||||    
T  12598206 caagcaacaaatcaatgatgtttgatcaag 12598235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 320
Target Start/End: Complemental strand, 16812931 - 16812683
Alignment:
Q  69 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 168  Q
    |||||||||||||| ||||| |||||||||||||  || |||| | ||||| |   ||||||||||||||||||||| ||||||| |||  ||||||||     
T  16812931 ctccactacctccaacattcccatgtgcattgtactaa-ctacaattgtgtttatattggaaaagaacggttaattcgttatcaatgaaatgattcaaat 16812833  T
Q  169 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 268  Q
     ||||| |||| | ||||||||| ||||||||||| |||| |||| ||  |||||||||||||  ||||| | | ||||||||||   ||   |||| ||    
T  16812832 acattccttcatatgacattaaccaaatcaagcaataaatcaatgttgaatgatcaagcttcttaaatgactat-ttgatgcgctgacacctatcaacgt 16812734  T
Q  269 ctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    |||||||| |||| | ||| || ||||||||||||||||| || ||||||||    
T  16812733 ctcttttctacctatgtat-aatgattgaagacttgaagatattacaagact 16812683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 19417217 - 19417034
Alignment:
Q  125 ttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatca 224  Q
    ||||||| ||||||||||||| |||| |||||| || || ||| |||||| |||| ||||||||||| |||||||            |||||||||||||    
T  19417217 ttggaaacgaacggttaattccttataaaggaaaggttttaaattcattccttcataggacattaaccaaatcaa------------tgatgtttgatca 19417130  T
Q  225 agcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    | |||||| || ||||||| ||||||  |   |||||||||  |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  19417129 aacttctctaacgattctaatgatgcattgacactcttcaatatctcttttcaacctctatataaatgattgcagacttgaagaaattacaagact 19417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 10254524 - 10254623
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    ||||||||||||| ||| |||||||||| ||  |||| ||||  ||| ||||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  10254524 gaacggttaattccttaacaaggaatggttttcaaattattccctcataggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttctc 10254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 300
Target Start/End: Original strand, 3779094 - 3779200
Alignment:
Q  193 aaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaagg 292  Q
    |||||||||||||||| ||||||||||||||||| ||||| || || ||| ||||||| |    ||||||||| |||||||  |||||| ||||||||||    
T  3779094 aaatcaagcaacaaatcaatgatgtttgatcaagtttctctaacgactct-ttgatgcaccgacactcttcaacgtctcttcgcaacctctatataaagg 3779192  T
Q  293 attgaaga 300  Q
    ||||||||    
T  3779193 attgaaga 3779200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 9803136 - 9802960
Alignment:
Q  132 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    |||||||||||||   ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || |||||||| |||||    
T  9803136 agaacggttaatttcctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttct 9803037  T
Q  232 cgaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    | || || ||| |||||| ||| | | |||| ||| |||| ||| | |||| ||||||||||| |||||| |||||||    
T  9803036 ctaacgactct-ttgatgtgctggcacctctacaacgtctttttcctacctctatataaaggaatgaagatttgaaga 9802960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 9805031 - 9804932
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    |||||||||||||  ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || |||||||| ||||||    
T  9805031 gaacggttaattccctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttctc 9804932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 24811284 - 24811391
Alignment:
Q  125 ttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatca 224  Q
    |||| |||||| |||||||||  ||||||||||  ||||||||| ||||  || | ||||||||||| |||||||||||||| | |||| |||||| |||    
T  24811284 ttggtaaagaatggttaattccatatcaaggaaatgattcaaaaccatttctttataggacattaaccaaatcaagcaacaattcaatgttgtttggtca 24811383  T
Q  225 agcttctc 232  Q
    | ||||||    
T  24811384 aacttctc 24811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 9762643 - 9762551
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaa 225  Q
    |||||||||||||  ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || ||||||||    
T  9762643 gaacggttaattccctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaa 9762551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 2501281 - 2501331
Alignment:
Q  181 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||| ||||| | |||||||||||||| ||||||| ||||||||||||||    
T  2501281 aggactttaaccatatcaagcaacaaatcaatgatgattgatcaagcttct 2501331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 11572447 - 11572493
Alignment:
Q  184 acattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 230  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||    
T  11572447 acattaaccatatcaagcaacaaatcaatgatgattgatcaagcttc 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 1878441 - 1878538
Alignment:
Q  134 aacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||||||  ||||| ||||||| ||  |||| ||||| ||  | || |||||| | |||||||||||||| |||| || ||||||||||||||    
T  1878441 aacggttaattccctatcatggaatggttttcaaattattctctcctacgatattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 1878538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 15871328 - 15871376
Alignment:
Q  181 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 229  Q
    ||||||||||  | |||||||||||||| ||||||| ||||||||||||    
T  15871328 aggacattaatcatatcaagcaacaaatcaatgatgattgatcaagctt 15871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 23125863 - 23125803
Alignment:
Q  171 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||  || |||||||| |||||||||||||||| | || || ||||||||||||||    
T  23125863 attctttcctagaacattaaccaaatcaagcaacaaatcattggtgattgatcaagcttct 23125803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 320
Target Start/End: Complemental strand, 14867242 - 14867037
Alignment:
Q  115 tgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatga 214  Q
    ||||||||  |||||||| |||| ||||||| | ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||| || |||||    
T  14867242 tgtgtctctattggaaaacaacgattaattcctcatcaaggaaaggtttcaaaatcattctttcataggacattaaccaaatcaagcaacatatcaatga 14867143  T
Q  215 tgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcac 314  Q
    |||||||||||| ||||| || || |||| ||||||| | | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  14867142 tgtttgatcaagtttctctaacgactctaatgatgcgttggcactcttcaacgtctcttttcaacatttatataaaggattgaagacttgaagaaactac 14867043  T
Q  315 aagact 320  Q
    ||||||    
T  14867042 aagact 14867037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 69 - 308
Target Start/End: Original strand, 27745895 - 27746133
Alignment:
Q  69 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 168  Q
    |||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||| ||||  | ||| |||||||||     
T  27745895 ctccactacctccaacattcccatgtgcattgtacgaagctacaactgtgtctccattgaaaaagaacgtttaattccttatacatgaaaggattcaaat 27745994  T
Q  169 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 268  Q
     ||||| |||| ||||||||||| |||||||||||||||| |||||||  ||||| | |||||| ||||| ||| |||||||| |   ||||||||| ||    
T  27745995 ccattccttcataggacattaaccaaatcaagcaacaaatcaatgatgaatgatcgaacttctcaaatgactct-ttgatgcgttgacactcttcaacgt 27746093  T
Q  269 ctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  27746094 ctcttttcaatctatatataaaggattgaagacttgaaga 27746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 26815952 - 26815777
Alignment:
Q  63 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 162  Q
    ||||| ||||||| |||||| ||||| ||||||||||||| |||||||| ||||||||||| ||| |||| || |||||||||  |||||| ||| ||||    
T  26815952 cactacctccactgcctccaacattcccatgtgcattgtacgaagctacaactgtgtctccattgaaaaataatggttaattcaatatcaaagaaaggat 26815853  T
Q  163 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatga 238  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||    
T  26815852 tcaaaatcattccttcataggacattaaccaaatcaagcaacaaatcaatgatgtatgatcaagcttctcaaatga 26815777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 249
Target Start/End: Original strand, 19498830 - 19498992
Alignment:
Q  87 tctcatgtgca-ttgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggac 185  Q
    ||||||||||| ||||| |||||||| |||||||||| |||||||||||||||  ||||| | ||||||||| |||||||||||||||| |||| |||||    
T  19498830 tctcatgtgcaattgtacgaagctacaactgtgtctc-tttggaaaagaacggacaattcctcatcaaggaaaggattcaaaatcattccttcataggac 19498928  T
Q  186 attaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatg 249  Q
    |||||| |||||||||||||||| ||||| ||||||||||||| ||| || ||||||| |||||    
T  19498929 attaaccaaatcaagcaacaaatcaatgaggtttgatcaagctgctctaacgattctaatgatg 19498992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 33240648 - 33240463
Alignment:
Q  123 ctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgat 222  Q
    |||||||| |||||||||||||| |  |||| |||  ||||||||  ||||  |||| ||||||||||| |||||||||||||||| |||| ||  ||||    
T  33240648 ctttggaagagaacggttaattcatcttcaatgaaatgattcaaatacatttcttcataggacattaaccaaatcaagcaacaaatcaatgttgaatgat 33240549  T
Q  223 caagcttctcgaatgattctattgatgcgctagtactct-tcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    |||||||||| || || |||| |||| || ||| || || ||||  ||||||||| |||| |||||||| || ||||||||||||||    
T  33240548 caagcttctctaacgactcta-tgattcgttagcacactctcaacatctcttttctacctatatataaaagaatgaagacttgaaga 33240463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 33248569 - 33248384
Alignment:
Q  123 ctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgat 222  Q
    |||||||| |||||||||||||| |  |||| |||  ||||||||  ||||  |||| ||||||||||| |||||||||||||||| |||| ||  ||||    
T  33248569 ctttggaagagaacggttaattcatcttcaatgaaatgattcaaatacatttcttcataggacattaaccaaatcaagcaacaaatcaatgttgaatgat 33248470  T
Q  223 caagcttctcgaatgattctattgatgcgctagtactct-tcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    |||||||||| || || |||| |||| || ||| || || ||||  ||||||||| |||| |||||||| || ||||||||||||||    
T  33248469 caagcttctctaacgactcta-tgattcgttagcacactctcaacatctcttttctacctatatataaaagaatgaagacttgaaga 33248384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 72 - 320
Target Start/End: Complemental strand, 14079833 - 14079585
Alignment:
Q  72 cactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatca 171  Q
    ||||||||| | |||||||||||||||||||  |||||||   ||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  14079833 cactacctctaacattctcatgtgcattgtacaaagctacagttgtgtctcctttggaaaagaagggttaattccttatcaaggaaatgattcaaaatca 14079734  T
Q  172 ttctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctc 271  Q
    ||| |||| | ||||||||| ||||||||||| |||| |||| ||  |||||||  ||||| ||||| |||||||||||| |   |||||||||   |||    
T  14079733 ttccttcatatgacattaaccaaatcaagcaataaatcaatgttgaatgatcaaaattctcaaatgactctattgatgcgttgacactcttcaacaactc 14079634  T
Q  272 ttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    | |||||||| ||||||||||||||||||||||||||| | ||||||||    
T  14079633 tattcaacctctatataaaggattgaagacttgaagaattaacaagact 14079585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 63 - 281
Target Start/End: Complemental strand, 16740208 - 16739991
Alignment:
Q  63 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 162  Q
    ||||| |||||||| ||| | ||||||||| ||||||||||||| ||||   |||||||||||||||||||||||| |||||| |||||| |||||||||    
T  16740208 cactacctccactatctctaacattctcatatgcattgtatgaaactacagttgtgtctcctttggaaaagaacggataattccttatcatggaatggat 16740109  T
Q  163 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 262  Q
    |||||||||||  |||| |||||| |||| |||||||||||||||| |||| ||  ||| |||||||||| ||||| ||| ||||||||||   ||||||    
T  16740108 tcaaaatcattacttcataggacaataaccaaatcaagcaacaaatcaatgttgaatgaccaagcttctcaaatgactct-ttgatgcgctcacactctt 16740010  T
Q  263 caaagtctcttttcaacct 281  Q
    ||| |||||||||||||||    
T  16740009 caacgtctcttttcaacct 16739991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 27988792 - 27988567
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagct-acgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaat 169  Q
    |||||||||||| ||||| ||| ||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| |||| |||||| || | ||||||    
T  27988792 ccactacctccaacattcccatttgcattgtacgaagcttaaaactgtgtctcctttgaaaaagaacggttaattccttataaaggaaaggttccaaaat 27988693  T
Q  170 cattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtc 269  Q
    |||| ||||| | || |||||| |||||||||||||||| || |||| ||||||||||||||| ||||| |||| |||||||     |||||||||  ||    
T  27988692 cattatttcatatgaaattaaccaaatcaagcaacaaatcaacgatgcttgatcaagcttctctaatgactctagtgatgcgtcgacactcttcaacatc 27988593  T
Q  270 tcttttcaacctttatataaaggatt 295  Q
    |||||||||||| ||||| |||||||    
T  27988592 tcttttcaacctctatatgaaggatt 27988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 69 - 320
Target Start/End: Complemental strand, 13243249 - 13242998
Alignment:
Q  69 ctccactacctccagcattctc-atgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaa 167  Q
    ||||||||||| || |||| || ||||||||||||  ||||||| | ||||||| | |||||||| ||| ||||||||  |||||||||| ||||||||     
T  13243249 ctccactaccttcaacattttccatgtgcattgtacaaagctacaaatgtgtcttcattggaaaaaaactgttaattccatatcaaggaaaggattcaag 13243150  T
Q  168 atcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaag 267  Q
     | |||| |||| | |||| |||| ||||||||||||  || | |||||||||||||||||| || ||||| ||| |||||| | |  |||||||||| |    
T  13243149 tttattccttcatatgacaataaccaaatcaagcaactcatcagtgatgtttgatcaagcttttcaaatgactct-ttgatgtgatgatactcttcaacg 13243051  T
Q  268 tctcttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
    |||||||| ||| | |||||||||||||||||||||| ||| || ||||||||    
T  13243050 tctctttttaacatctatataaaggattgaagacttgtagatattacaagact 13242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 300
Target Start/End: Original strand, 31719757 - 31719984
Alignment:
Q  72 cactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatca 171  Q
    ||||||||||| |||||| ||| || |||||  ||| |||   ||||||||  ||| ||||||||||||||||| || |||||||| |||||||||  ||    
T  31719757 cactacctccaacattctgatgcgcgttgtactaagatacatatgtgtctctattgaaaaagaacggttaattccttttcaaggaaaggattcaaataca 31719856  T
Q  172 ttctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctc 271  Q
    ||| |||| | ||||||||| ||||||| |||||||| |||  ||   ||||||||||||| || || ||| ||||||||||   ||||| ||| |||||    
T  31719857 ttccttcataagacattaaccaaatcaaacaacaaatcaatattgaacgatcaagcttctcaaaagactct-ttgatgcgctgacactctccaacgtctc 31719955  T
Q  272 ttttcaacctttatataaaggattgaaga 300  Q
    ||||| |||| ||||||||||||||||||    
T  31719956 ttttctacctctatataaaggattgaaga 31719984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 14758282 - 14758166
Alignment:
Q  115 tgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatga 214  Q
    ||||||||  ||||||  |||| || |||||  ||||||||||||||||  |||| |||| |||| | ||||||||| | |||||||||||||| ||||     
T  14758282 tgtgtctctattggaatggaacagtcaattccctatcaaggaatggatttcaaattattccttcataagacattaaccatatcaagcaacaaatcaatgt 14758183  T
Q  215 tgtttgatcaagcttct 231  Q
    || ||||||||||||||    
T  14758182 tgattgatcaagcttct 14758166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 16740297 - 16740244
Alignment:
Q  14 ctgaagatcaagcataatgtttctggag-tgtcagaaggtcaatgaatgtcact 66  Q
    |||||||||||||| |||| ||||| || |||||||||||||||||||||||||    
T  16740297 ctgaagatcaagcacaatggttctgaagatgtcagaaggtcaatgaatgtcact 16740244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 12399068 - 12399019
Alignment:
Q  15 tgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtca 64  Q
    |||||||||| ||| ||| ||||| ||||| |||||||||||||||||||    
T  12399068 tgaagatcaaacatgatggttctgaagtgttagaaggtcaatgaatgtca 12399019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 15478031 - 15478067
Alignment:
Q  195 atcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  15478031 atcaagcaacaaatcaatgatgattgatcaagcttct 15478067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 23917848 - 23917613
Alignment:
Q  73 actacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcat 172  Q
    |||||||||| ||||| |||||||||| || |||||||| | ||||||||| ||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  23917848 actacctccaacattcccatgtgcattttaggaagctacaaatgtgtctccattggaaaagaacgattaattacttatcaaggaaaggattcaaactcat 23917749  T
Q  173 tctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctct 272  Q
    ||  ||| ||||||||||| |||||||| || |||| |||| ||  |||||||||||||| ||||| ||| |||||| ||| | |||||||||  |||||    
T  23917748 tccatcataggacattaaccaaatcaaggaagaaatcaatgttgaatgatcaagcttctcaaatgactct-ttgatgtgctggcactcttcaacatctct 23917650  T
Q  273 tttcaacctttatataaaggattgaagacttgaagaa 309  Q
    |||| |||| |||||||| |||| |||||||||||||    
T  23917649 tttctacctctatataaacgattaaagacttgaagaa 23917613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 309
Target Start/End: Complemental strand, 23550168 - 23549991
Alignment:
Q  132 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||| |||||| |||||||| ||  ||||||||||||||| |||| | | || |||| || ||||||||||||| |||| || ||||||| ||||||    
T  23550168 agaacggataattcattatcaagaaaatgattcaaaatcattccttcataaggcactaaccaagtcaagcaacaaatcaatgttgattgatcatgcttct 23550069  T
Q  232 cgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 309  Q
    | ||  | ||||||||||||||   | ||||||| || ||| |||||||| |||||||||||||||||||||||||||    
T  23550068 caaacaactctattgatgcgctgacattcttcaacgtatctattcaacctctatataaaggattgaagacttgaagaa 23549991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 10153983 - 10153862
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    |||| |||||||| |||| ||||||||| ||  |||| |||| |||   | |||||||| |||||||||||||||| |||||||||||||||||||| ||    
T  10153983 gaacagttaattccttattaaggaatggttttcaaattattccttctttgtacattaaccaaatcaagcaacaaatcaatgatgtttgatcaagcttttc 10153884  T
Q  233 gaatgattctattgatgcgctag 255  Q
     || || ||| ||||||||||||    
T  10153883 taacgactct-ttgatgcgctag 10153862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 18209098 - 18209006
Alignment:
Q  137 ggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 230  Q
    ||||||||| ||||||||||| || |||||  |||||| |||| ||  ||||||  |||||||||||||||| |||||||||||||||||||||    
T  18209098 ggttaattccttatcaaggaaaggtttcaat-tcattccttcatagagcattaaacaaatcaagcaacaaatcaatgatgtttgatcaagcttc 18209006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 22640243 - 22640144
Alignment:
Q  132 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||||||||  || ||| |||||| ||  |||| ||||  ||| || |||||||| |||||||||||||||| |||| || |||||||| |||||    
T  22640243 agaacggttaattccctaccaaagaatggttttcaaattattccctcatagaacattaaccaaatcaagcaacaaatcaatgttgattgatcaaacttct 22640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 25399285 - 25399234
Alignment:
Q  181 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    ||||||||||| |||||||||||||||| |||| || || ||||||||||||    
T  25399285 aggacattaaccaaatcaagcaacaaatcaatgttgattaatcaagcttctc 25399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 308
Target Start/End: Complemental strand, 31359234 - 31359112
Alignment:
Q  186 attaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaaccttta 284  Q
    |||||| | |||||||||||||| ||||||| ||||||||||||||  ||||| ||| |||||| ||| | | |||| ||| ||||||||   || | ||    
T  31359234 attaaccatatcaagcaacaaatcaatgatgattgatcaagcttctacaatgactct-ttgatgtgctggcacctctacaacgtctctttcatacatcta 31359136  T
Q  285 tataaaggattgaagacttgaaga 308  Q
    |||||| || ||||||||||||||    
T  31359135 tataaatgaatgaagacttgaaga 31359112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 15598709 - 15598531
Alignment:
Q  130 aaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 229  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||| ||||| ||||||||||| |||||||||||||||| |||| ||  |||||||||||    
T  15598709 aaagaacggttaattccttatcagggaaaggattcaaattcattttttcataggacattaacaaaatcaagcaacaaatcaatgttgaatgatcaagctt 15598610  T
Q  230 ctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 309  Q
    |||   ||| |  ||||||||||| | ||||| ||| |||||||||| |||| |||||||||||||||||||||||||||    
T  15598609 ctctggtgact-aattgatgcgctggcactctccaacgtctcttttctacctctatataaaggattgaagacttgaagaa 15598531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 24635273 - 24635100
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    ||||||||||||| |||| ||||||||| ||  | || |||| |||| | ||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  24635273 gaacggttaattccttattaaggaatggtttttagattattccttcatatgacattaaccaaattaagcaacaaatcaatgatgtttgatcaagcttctc 24635174  T
Q  233 gaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaacctttatataaaggattgaagacttgaa 306  Q
     |  || ||| |||||||||| | | |||| ||| |||||||||| ||||  ||||||| || ||||||||||||    
T  24635173 catcgactct-ttgatgcgctggaacctctacaatgtctcttttctacctccatataaatgaatgaagacttgaa 24635100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 17879507 - 17879401
Alignment:
Q  216 gtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaatcaca 315  Q
    ||||||||||||||||| ||||| || | ||||||| |    |||||||| || |||||||||||| |||||||||||||||||||||||| |||| |||    
T  17879507 gtttgatcaagcttctctaatgagtcaaatgatgcgttgacgctcttcaacgtatcttttcaacctctatataaaggattgaagacttgaataaattaca 17879408  T
Q  316 agacttt 322  Q
    |||||||    
T  17879407 agacttt 17879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 17687935 - 17687837
Alignment:
Q  133 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||| |||||||  ||||||||||||| ||  |||| |||| |||  || |||||||| | ||||||||| |||| ||||||| ||||||||||||||    
T  17687935 gaacgattaattccctatcaaggaatggttttcaaattattccttcctagaacattaaccatatcaagcaataaatcaatgatgattgatcaagcttct 17687837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 17879669 - 17879590
Alignment:
Q  73 actacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatca 152  Q
    |||||||||| ||||||||||| |||| || ||||||||   ||||||||  | ||||||||| ||||||||| ||||||    
T  17879669 actacctccaacattctcatgtacattatacgaagctacatttgtgtctctataggaaaagaatggttaattccttatca 17879590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 27739785 - 27739737
Alignment:
Q  183 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||| | |||||||||||||| ||||||| |||||||| |||||    
T  27739785 gacattaaccatatcaagcaacaaatcaatgatgattgatcaaacttct 27739737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 69 - 303
Target Start/End: Complemental strand, 17986 - 17753
Alignment:
Q  69 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 168  Q
    ||||||||||| || ||||  |||||||||| ||||||||||| |  ||||||| |||   |||||||||||||||| |||||||||||   |||||||     
T  17986 ctccactaccttcaacatttccatgtgcattatatgaagctacaatagtgtctcttttactaaagaacggttaattccttatcaaggaaaatattcaaat 17887  T
Q  169 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 268  Q
    ||| || |||| | | ||||||| |||||||||||||||| |||| |||||||||| ||||||| ||||| ||| ||| ||||| |  ||||||||| ||    
T  17886 tcactcattcatatgccattaaccaaatcaagcaacaaatcaatgttgtttgatcatgcttctcaaatgactct-ttgttgcgcaaacactcttcaacgt 17788  T
Q  269 ctcttttcaacctttatataaaggattgaagactt 303  Q
    | |||||| |||| ||||||||| |||||||||||    
T  17787 cacttttctacctctatataaagaattgaagactt 17753  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 12078886 - 12078648
Alignment:
Q  63 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 162  Q
    ||||| ||||| || ||||| |||||||||||||| |||| |||||| |  || |||||| ||||||||||||  | |||||| ||||||||||| ||||    
T  12078886 cactacctccattatctccaacattctcatgtgcactgtacgaagctgcagctatgtctcttttggaaaagaatagataattccttatcaaggaaaggat 12078787  T
Q  163 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 262  Q
    || ||||||   ||||| ||||||||||| |||||||| ||||||  ||||||| ||||||||| ||||| ||||| | |||||||||||| | | ||||    
T  12078786 tc-aaatca---tttcataggacattaaccaaatcaagaaacaaaccaatgatgcttgatcaagtttctcaaatgaatatattgatgcgctggcattctt 12078691  T
Q  263 caaagtctcttttcaacctttatataaaggattgaagacttgaa 306  Q
    ||| || || |||| |||| |||||||||||||||| |||||||    
T  12078690 caacgtatc-tttcgacctctatataaaggattgaatacttgaa 12078648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 12078982 - 12078922
Alignment:
Q  7 gataattctgaagatcaagcataatgtttctgg-agtgtcagaaggtcaatgaatgtcact 66  Q
    |||| |||||||||||||||| |||| |||||| ||||| |||||||||||| ||||||||    
T  12078982 gatagttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatggatgtcact 12078922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 26118808 - 26118892
Alignment:
Q  148 tatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    ||||||||||||| ||  ||||  |||||||  ||||||| ||  |||||||||||||||| |||| || |||||||||||||||    
T  26118808 tatcaaggaatggttttgaaatttttctttcctaggacatcaatcaaatcaagcaacaaatcaatgttgattgatcaagcttctc 26118892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 10328471 - 10328719
Alignment:
Q  71 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 170  Q
    |||||||||||| ||||| ||||||||||||| || ||||| | ||||||||   ||||   ||||||| ||||| |||||||||||||| ||  ||||     
T  10328471 ccactacctccaacattcccatgtgcattgtagga-gctacaattgtgtctctaatggattggaacggtgaattccttatcaaggaatggttttcaaatt 10328569  T
Q  171 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtct 270  Q
    |||| ||   ||||||||||| |||||||||||||||||||||||| ||||||||||||||| || || | |||||||| ||| | ||| |||||  | |    
T  10328570 attccttactaggacattaaccaaatcaagcaacaaattaatgatgattgatcaagcttctctaaggactatattgatgtgcttgcactattcaacatat 10328669  T
Q  271 cttttcaacctttatataaaggattgaagacttgaagaaatcacaagact 320  Q
     | | |||||| ||||||||||||  |||| |||||||||  ||||||||    
T  10328670 atctgcaacctctatataaaggatcaaagatttgaagaaactacaagact 10328719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 308
Target Start/End: Complemental strand, 15193687 - 15193463
Alignment:
Q  69 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 168  Q
    |||||| ||||||| ||||  ||||||||||||| ||||||||   ||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||     
T  15193687 ctccaccacctccaacatttccatgtgcattgtacgaagctacatttgtgtctccattggaaaa--acggttaattccttatcaaggaaaggattcaaat 15193590  T
Q  169 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 268  Q
      |||| |||| |||||||||||            |||||||||| ||  |||||||||||||| ||||| ||| |||||| ||||  ||||||||| ||    
T  15193589 atattccttcataggacattaac------------caaattaatgttgaatgatcaagcttctcaaatgactct-ttgatgtgctaccactcttcaacgt 15193503  T
Q  269 ctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    || |||||||||| || ||||| |||| |||| |||||||    
T  15193502 cttttttcaacctctacataaaagattaaagagttgaaga 15193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 32468613 - 32468773
Alignment:
Q  71 ccactacctccagcattctcatgtgca-ttgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaat 169  Q
    |||||||||||| ||||| |||||||| || || |||||||| ||||||||  | |||||||||||| |||||||| |  ||||||||   ||| ||| |    
T  32468613 ccactacctccaacattcccatgtgcaattatacgaagctacaactgtgtc--cattggaaaagaacagttaattcctcgtcaaggaaataattaaaatt 32468710  T
Q  170 cattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    |||||  ||| ||||||||||| ||||||||||| |||| ||| ||| | |||||||||||||    
T  32468711 cattccatcataggacattaaccaaatcaagcaagaaatcaattatgatggatcaagcttctc 32468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 308
Target Start/End: Complemental strand, 23087638 - 23087471
Alignment:
Q  141 aattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgatt 240  Q
    |||||| ||||||||||||  ||  |||| |||| |||  ||||||||||| | |||||||||||||| |||| || ||||||||||||||| || || |    
T  23087638 aattctctatcaaggaatgattttcaaattattccttcctaggacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctctaacgact 23087539  T
Q  241 ctattgatgcgct-agtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 308  Q
    || |||||| | | |   |||| ||| ||||||||   |||| ||||||||||| ||||||||||||||    
T  23087538 ct-ttgatgtgttgacacctctacaacgtctctttgatacctctatataaaggaatgaagacttgaaga 23087471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 17526586 - 17526636
Alignment:
Q  181 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 231  Q
    ||||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  17526586 aggacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 17526636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 24619592 - 24619508
Alignment:
Q  148 tatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 232  Q
    ||||||||||||| ||  |||| ||||  ||  ||||| ||||| | |||||||||||||| |||| || |||||||||||||||    
T  24619592 tatcaaggaatggttttcaaattattcactcctaggacgttaaccatatcaagcaacaaatcaatgttgattgatcaagcttctc 24619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 310
Target Start/End: Complemental strand, 49846 - 49653
Alignment:
Q  116 gtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgat 215  Q
    |||||||||||| |||||||| ||| | || |||||||||||    ||||||||||||| |||| ||||||||||| | |||||||||||||| ||||||    
T  49846 gtgtctcctttgaaaaagaactgttgactccttatcaaggaaaaatttcaaaatcattccttcataggacattaaccatatcaagcaacaaatcaatgat 49747  T
Q  216 gtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaa 310  Q
      | |||||||||| || || || |||| ||||||      ||||||||| || |||||||||||| |||||||||||||| |||||||||||||    
T  49746 tctcgatcaagcttatctaacgactctaatgatgcatcgacactcttcaacgt-tcttttcaacctctatataaaggattggagacttgaagaaa 49653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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