View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5812_high_4 (Length: 306)
Name: NF5812_high_4
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 886243 - 885962
Alignment:
| Q |
9 |
aggatatatgcgtgtatgtatacctgttcaatgctgccatcttctatctctgtattaaatgtaagcaacatggactcatagagtagattttctaaatctt |
108 |
Q |
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| T |
886243 |
aggatatatgcgtgtatgtatacctgttcaatgctgccatcttctatctctgtattaaatgtaagcaacatggactcatagagtagattttctaaatctt |
886144 |
T |
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| Q |
109 |
caatacgaatcggtgctgtaatcaatacaaatttacatataacaaagnnnnnnnntaaatgagacataatgaaggatgaatcaataaatagaaaattagt |
208 |
Q |
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| T |
886143 |
caatacgaatcggtgctgtaatcaatacaaatttacatataacaaagaaaaaaaataaatgagacataatgaaggatgaatcaataaatagaaaattagt |
886044 |
T |
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| Q |
209 |
cgagaacacaattaccattggatttggagagccaagagaataaatgagaagcaagttggtgtgatttttggagggaatcaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
886043 |
cgagaacacaattaccattggatttggagagccaagagaataaatgagaagcaagttggtgtgatttttggagggaatcaca |
885962 |
T |
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