View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812_high_6 (Length: 254)

Name: NF5812_high_6
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812_high_6
NF5812_high_6
[»] chr6 (4 HSPs)
chr6 (52-241)||(33694852-33695039)
chr6 (52-241)||(12938713-12938901)
chr6 (53-200)||(28138039-28138184)
chr6 (75-159)||(14532047-14532131)
[»] chr7 (9 HSPs)
chr7 (72-241)||(19436764-19436931)
chr7 (72-241)||(29833903-29834070)
chr7 (52-156)||(29258458-29258563)
chr7 (128-218)||(6442633-6442721)
chr7 (121-227)||(45972423-45972527)
chr7 (121-174)||(47327942-47327995)
chr7 (132-223)||(34094118-34094207)
chr7 (194-237)||(29258580-29258623)
chr7 (121-200)||(29243380-29243455)
[»] chr4 (10 HSPs)
chr4 (72-241)||(27293038-27293205)
chr4 (72-241)||(4919106-4919273)
chr4 (51-227)||(42976401-42976575)
chr4 (128-218)||(45989591-45989679)
chr4 (121-227)||(28679508-28679612)
chr4 (128-226)||(42069019-42069115)
chr4 (121-227)||(55919359-55919463)
chr4 (121-177)||(15531231-15531287)
chr4 (121-200)||(20133410-20133487)
chr4 (128-206)||(47031452-47031528)
[»] chr3 (11 HSPs)
chr3 (72-241)||(50650350-50650517)
chr3 (72-241)||(12938493-12938660)
chr3 (74-227)||(31658792-31658943)
chr3 (72-162)||(33216690-33216780)
chr3 (72-149)||(29833367-29833444)
chr3 (121-176)||(36950179-36950234)
chr3 (121-177)||(29703556-29703612)
chr3 (121-174)||(5232946-5232999)
chr3 (121-200)||(39833230-39833307)
chr3 (121-177)||(53282294-53282350)
chr3 (121-174)||(20104322-20104375)
[»] chr5 (7 HSPs)
chr5 (72-241)||(1828504-1828671)
chr5 (74-241)||(30624958-30625123)
chr5 (72-241)||(40313969-40314136)
chr5 (72-241)||(41413401-41413568)
chr5 (72-162)||(31482104-31482194)
chr5 (121-177)||(39884696-39884752)
chr5 (121-227)||(24788296-24788400)
[»] chr2 (10 HSPs)
chr2 (72-241)||(14096348-14096515)
chr2 (108-174)||(18977134-18977200)
chr2 (121-176)||(7089225-7089280)
chr2 (121-227)||(15330735-15330839)
chr2 (121-227)||(37261669-37261773)
chr2 (121-174)||(37078947-37079000)
chr2 (121-227)||(14810087-14810191)
chr2 (121-227)||(16429864-16429968)
chr2 (121-227)||(17690604-17690708)
chr2 (121-176)||(33755091-33755146)
[»] chr1 (6 HSPs)
chr1 (80-240)||(27286264-27286422)
chr1 (72-241)||(52385772-52385939)
chr1 (56-219)||(39241634-39241792)
chr1 (121-227)||(12981521-12981625)
chr1 (128-218)||(45325616-45325704)
chr1 (121-227)||(45348240-45348344)
[»] chr8 (5 HSPs)
chr8 (72-162)||(13802715-13802805)
chr8 (121-176)||(3879488-3879543)
chr8 (72-174)||(23613575-23613678)
chr8 (121-227)||(531684-531788)
chr8 (121-200)||(30945452-30945527)
[»] scaffold0166 (1 HSPs)
scaffold0166 (121-227)||(30679-30783)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 33694852 - 33695039
Alignment:
Q  52 gatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttac 151  Q
    |||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||     
T  33694852 gatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatcttaacagttagatttat 33694951  T
Q  152 ttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33694952 ttggcctctatattattgtgg--tacaccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 33695039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 12938713 - 12938901
Alignment:
Q  52 gatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattta 150  Q
    |||||||||||||||  ||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||||     
T  12938713 gatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttg 12938812  T
Q  151 cttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
     |||| |||||| |||||||||  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||||||||||    
T  12938813 tttggtctctatgttattgtgg--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactcattcatctc 12938901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 28138184 - 28138039
Alignment:
Q  53 atgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttact 152  Q
    ||||||||||||||   | ||||||| ||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||  ||||||||||||    
T  28138184 atgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatcttaaaggttagatttact 28138085  T
Q  153 tggcctctatattattgtggtatacgccctctacatatgatttttctt 200  Q
    ||| ||||||||||||||||  |||| | |||||| ||||||||||||    
T  28138084 tggtctctatattattgtgg--tacgtcatctacacatgatttttctt 28138039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 14532131 - 14532047
Alignment:
Q  75 aattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctc 159  Q
    |||||||||||| |  |||||||| ||||||| |||||| |||| ||||| |||| ||||||||  |||||||||  ||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttggcctc 14532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 19436764 - 19436931
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| ||||||||    
T  19436764 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtg 19436863  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| |||| |||| ||||||||||||||  ||||| |||||| || |||||||||||||||||||||    
T  19436864 g--tacaccctatacacatgatttttcttatttttccaattctctttcctctttatcactcattcatctc 19436931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 29834070 - 29833903
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| ||||||||    
T  29834070 acaaactctaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtg 29833971  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    ||| |  |||||| || |||||||| |||||  ||||| |||||| || |||||||||||||||||||||    
T  29833970 gtaaa--ccctctgcacatgattttacttatttttccaattctctttcctctttatcactcattcatctc 29833903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 29258458 - 29258563
Alignment:
Q  52 gatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatc-ttaacagttagattta 150  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||| ||| ||||| ||||||||||    
T  29258458 gatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataatctttaacggttagattta 29258557  T
Q  151 cttggc 156  Q
    ||||||    
T  29258558 cttggc 29258563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 6442633 - 6442721
Alignment:
Q  128 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 218  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 6442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 45972423 - 45972527
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45972520  T
Q  221 tctttat 227  Q
    |||||||    
T  45972521 tctttat 45972527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 47327942 - 47327995
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 174  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 47327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 34094118 - 34094207
Alignment:
Q  132 atcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttct 223  Q
    |||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| || |||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttcacttct 34094207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 29258580 - 29258623
Alignment:
Q  194 ttttcttataattccatttctctctcttctttatcactcattca 237  Q
    |||||||||||||||   ||||||||||||||||||||||||||    
T  29258580 ttttcttataattccgcatctctctcttctttatcactcattca 29258623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 29243380 - 29243455
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 200  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 29243455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 27293038 - 27293205
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| ||||||||    
T  27293038 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtg 27293137  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||||||||||    
T  27293138 g--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactcattcatctc 27293205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 4919106 - 4919273
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||  |||||||||  |||| ||||||  |||||||    
T  4919106 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtg 4919205  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    ||| |||  ||||||| ||||||||||||||  ||||| |||| | || |||||||||||||||||||||    
T  4919206 gtacacg--ctctacacatgatttttcttatttttccaattctatttcctctttatcactcattcatctc 4919273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 42976401 - 42976575
Alignment:
Q  51 agatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattta 150  Q
    ||||||||||||| ||   ||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  42976401 agatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagattta 42976500  T
Q  151 cttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttat 227  Q
    ||||| |||||| ||| |||||  ||| || |||||| |||||||||||| || |  || ||||||||| |||||||    
T  42976501 cttggtctctatgttaatgtgg--tacaccatctacacatgatttttcttctagtatcaattctctctcctctttat 42976575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 45989679 - 45989591
Alignment:
Q  128 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 218  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 45989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 28679508 - 28679612
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||| |||||||||| ||||| |||||||||  |||||| |||||||||||||  || |||||| |||||||||||| || | ||| || ||||||     
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtata--ccatctacacatgatttttcttctagtaccaattttctctcc 28679605  T
Q  221 tctttat 227  Q
    |||||||    
T  28679606 tctttat 28679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 42069115 - 42069019
Alignment:
Q  128 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttcttta 226  Q
    |||||||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| |||| ||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttctcctcttta 42069019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 55919463 - 55919359
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| |||| |||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 55919366  T
Q  221 tctttat 227  Q
    |||||||    
T  55919365 tctttat 55919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 15531287 - 15531231
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 177  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 15531231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 20133410 - 20133487
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 200  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 20133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 47031528 - 47031452
Alignment:
Q  128 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataatt 206  Q
    |||||||||||  |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| |||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatt 47031452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 50650517 - 50650350
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| ||||||||    
T  50650517 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtg 50650418  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||||||||||    
T  50650417 g--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactcattcatctc 50650350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 12938493 - 12938660
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  12938493 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 12938592  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||| ||||||    
T  12938593 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatgcatctc 12938660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 31658943 - 31658792
Alignment:
Q  74 aaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggt 173  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||| |||||||||     
T  31658943 aaattctaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttattgtgg- 31658845  T
Q  174 atacgccctctacatatgatttttcttataattccatttctctctcttctttat 227  Q
     ||| || |||||| |||||||||||| ||||  || ||||||||| |||||||    
T  31658844 -tacaccatctacacatgatttttcttctaatatcaattctctctcctctttat 31658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 33216780 - 33216690
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 162  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||  |||||||||  |||||||||||    
T  33216780 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggcctctat 33216690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 29833367 - 29833444
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattt 149  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||    
T  29833367 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 36950234 - 36950179
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 176  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 36950179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 29703612 - 29703556
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 177  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 29703556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 5232946 - 5232999
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 174  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 5232999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 39833307 - 39833230
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 200  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 39833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 53282294 - 53282350
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 177  Q
    |||||||||| |||||||  ||||||||||||| | |||||| ||||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatac 53282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 20104322 - 20104375
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 174  Q
    ||||||||||||||||||  ||||||||||||||  || ||| |||||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggta 20104375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 1828504 - 1828671
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  1828504 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 1828603  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||| ||||||    
T  1828604 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatgcatctc 1828671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 241
Target Start/End: Original strand, 30624958 - 30625123
Alignment:
Q  74 aaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggt 173  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||||  |||| |||||| |||||||||     
T  30624958 aaattttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtgg- 30625056  T
Q  174 atacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
     ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||||||||||    
T  30625057 -tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactcattcatctc 30625123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 40313969 - 40314136
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||  ||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  40313969 acaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 40314068  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||| ||||||    
T  40314069 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactcatgcatctc 40314136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 41413568 - 41413401
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  41413568 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 41413469  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| |||| |||| |||||||||||||||||||||  ||||| || |||||||||||||| ||||||    
T  41413468 g--tacaccctttacacatgatttttcttataattccaaatctctttcctctttatcactcatgcatctc 41413401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 31482194 - 31482104
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 162  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||  |||||||||  |||| ||||||    
T  31482194 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctat 31482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 39884696 - 39884752
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 177  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 39884752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 24788400 - 24788296
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 24788303  T
Q  221 tctttat 227  Q
    |||||||    
T  24788302 tctttat 24788296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 14096348 - 14096515
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| ||||||  |||||||    
T  14096348 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtg 14096447  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    ||| |||  ||||||| ||||||||||||||  ||||| |||| | || |||||||||||||||||||||    
T  14096448 gtacacg--ctctacacatgatttttcttatttttccaattctatttcctctttatcactcattcatctc 14096515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 18977200 - 18977134
Alignment:
Q  108 caccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 174  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggta 18977134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 7089225 - 7089280
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 176  Q
    ||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggtata 7089280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 15330735 - 15330839
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 15330832  T
Q  221 tctttat 227  Q
    |||||||    
T  15330833 tctttat 15330839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 37261773 - 37261669
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 37261676  T
Q  221 tctttat 227  Q
    |||||||    
T  37261675 tctttat 37261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 37078947 - 37079000
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 174  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 37079000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 14810191 - 14810087
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  |||||||||| |||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 14810094  T
Q  221 tctttat 227  Q
    |||||||    
T  14810093 tctttat 14810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 16429864 - 16429968
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| ||||| |||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 16429961  T
Q  221 tctttat 227  Q
    |||||||    
T  16429962 tctttat 16429968  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 17690604 - 17690708
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 17690701  T
Q  221 tctttat 227  Q
    |||||||    
T  17690702 tctttat 17690708  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 33755146 - 33755091
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 176  Q
    ||||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtata 33755091  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 27286264 - 27286422
Alignment:
Q  80 taatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgc 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||  ||| |    
T  27286264 taatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtgg--tacac 27286361  T
Q  180 cctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatct 240  Q
    |||||||| ||||||||||||||  ||||| |||||| || ||||||||||||||||||||    
T  27286362 cctctacacatgatttttcttatttttccaattctctttcctctttatcactcattcatct 27286422  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 52385939 - 52385772
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 171  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||| |||||| || |||||||||  |||  |||||| ||||||||    
T  52385939 acaaattctaaaatggatcacgtgtttcatatgttccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtg 52385840  T
Q  172 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactcattcatctc 241  Q
    |  ||| ||||||||| |||||||||||||   ||||| |||||| || |||||||||| ||||||||||    
T  52385839 g--tacaccctctacacatgatttttcttacttttccaattctctttcctctttatcacccattcatctc 52385772  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 39241634 - 39241792
Alignment:
Q  56 acacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttg 154  Q
    |||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  39241634 acacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatcttaacggttagatttacctg 39241732  T
Q  155 gcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctc 219  Q
       ||| | |||||||||  ||| || |||||| |||||||||||| ||||| || |||||||||    
T  39241733 ---tctttgttattgtgg--tacaccatctacacatgatttttcttctaattacaattctctctc 39241792  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 12981521 - 12981625
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 12981618  T
Q  221 tctttat 227  Q
    |||||||    
T  12981619 tctttat 12981625  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 45325704 - 45325616
Alignment:
Q  128 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 218  Q
    |||||||||||| |||||||||| || | |||||| |||||||||||||  || |||||| |||||||||||  ||||| || ||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtata--ccatctacacatgatttttctgttaatttcaattctctct 45325616  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 45348344 - 45348240
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45348247  T
Q  221 tctttat 227  Q
    |||||||    
T  45348246 tctttat 45348240  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 13802805 - 13802715
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 162  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||  |||| ||||||    
T  13802805 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctat 13802715  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 3879543 - 3879488
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 176  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 3879488  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 23613575 - 23613678
Alignment:
Q  72 acaaattctaatatggatcacttgctccatatgttccaccatagacaa-gtttatttcatgatcttaacagttagatttacttggcctctatattattgt 170  Q
    ||||||||||||||||| ||||||||| |||||||||||||| || ||  ||| ||| | ||||||||| |||||||||  |||| ||| ||  ||||||    
T  23613575 acaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattgt 23613674  T
Q  171 ggta 174  Q
    ||||    
T  23613675 ggta 23613678  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 531684 - 531788
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    |||||||||| || ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 531781  T
Q  221 tctttat 227  Q
    |||||||    
T  531782 tctttat 531788  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 30945527 - 30945452
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 200  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 30945452  T

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Target: scaffold0166 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 30783 - 30679
Alignment:
Q  121 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 220  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 30686  T
Q  221 tctttat 227  Q
    |||||||    
T  30685 tctttat 30679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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