View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5812_high_9 (Length: 211)
Name: NF5812_high_9
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 4247770 - 4247587
Alignment:
| Q |
12 |
aacaaaggaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacat |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4247770 |
aacaaatgaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacat |
4247671 |
T |
|
| Q |
112 |
tatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaattataggaatggtttcttttacttgctgaaact |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4247670 |
tatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaattataggaatggtttcttttacttgctgaaact |
4247587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 2402305 - 2402401
Alignment:
| Q |
15 |
aaaggaaaagatgaaatgttttataatagacagaccaccaacttatcgcaaacttcatatatagaatttgcaatctcaacagctcggtcaaagacat |
111 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
2402305 |
aaagaaaaggatgaaatgttttaaaataggaagaccaccaacttactgcaaacttcatatatagaatttgaaatctcaacagttctgtcaaagacat |
2402401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University