View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5812_low_5 (Length: 302)
Name: NF5812_low_5
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5812_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 13872187 - 13872458
Alignment:
| Q |
27 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtata |
126 |
Q |
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| T |
13872187 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatggggccattgattatttgtagcgatgcctggtata |
13872286 |
T |
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| Q |
127 |
aacaaaaagtttaaaagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataag |
226 |
Q |
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| T |
13872287 |
aacaaaaattttaaaagtgcttaatcaaactatttatccattctactaattttaaatttgtttcccttaatgcaaacttcttgtttatcttatccataag |
13872386 |
T |
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| Q |
227 |
tgcttgaaacgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaataatctacc |
298 |
Q |
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| T |
13872387 |
tgcttgaaacgaacatttttaatgtcacccatgtacacatacacgataaaatcttctaaagaataatttacc |
13872458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 13884479 - 13884584
Alignment:
| Q |
27 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccattgattatttgtagcgatgcctggtata |
126 |
Q |
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| T |
13884479 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcccataaacacaattaacaaggaaatgaagccattaattacttgcagtgatg--tcgtata |
13884576 |
T |
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| Q |
127 |
aacaaaaa |
134 |
Q |
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| T |
13884577 |
aacaaaaa |
13884584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 12957719 - 12957646
Alignment:
| Q |
27 |
gacaattaccaagaacttcaacaagtgtagtgatcacttcctataaacacaattaacaaggaaatgaggccatt |
100 |
Q |
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| T |
12957719 |
gacaattaccaagaacttcaaaaagtgtagtaatcacttcccataaacacaattaacaaggaaatgaggccatt |
12957646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 13876670 - 13876736
Alignment:
| Q |
141 |
aagtgcttaatcaaactatttatccatcctactaattttaaatttgtttcccttaatgcaaacttct |
207 |
Q |
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| T |
13876670 |
aagtgtttaatcaaactatttatccatcttactaattttaaatttgtttcccttaatgcaaacttct |
13876736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 13876911 - 13876969
Alignment:
| Q |
233 |
aaacgaacatttttaatgccacccatgtacacatacacgataaaatcttctaaagaata |
291 |
Q |
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| T |
13876911 |
aaacgaacctttttcatgccacccatgtatacatacacaataaaatcttctaaagaata |
13876969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 13874529 - 13874605
Alignment:
| Q |
30 |
aattaccaagaacttcaacaagtgtagtgatcactt---cctataaacacaattaacaa-ggaaatgaggccattgat |
103 |
Q |
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| T |
13874529 |
aattaccaagaacttca-caagtgtggcgatcacttagtcccataaacacaattaacaacgaaaatgaggccattgat |
13874605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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