View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5812_low_9 (Length: 213)

Name: NF5812_low_9
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5812_low_9
NF5812_low_9
[»] chr6 (3 HSPs)
chr6 (56-174)||(28138008-28138126)
chr6 (52-143)||(12938769-12938860)
chr6 (60-143)||(33694915-33694998)
[»] chr4 (10 HSPs)
chr4 (52-196)||(42976457-42976602)
chr4 (66-155)||(20133410-20133499)
chr4 (66-164)||(55919365-55919463)
chr4 (52-143)||(27293073-27293164)
chr4 (66-164)||(28679508-28679606)
chr4 (73-146)||(45989606-45989679)
chr4 (52-143)||(4919141-4919232)
chr4 (73-146)||(42069042-42069115)
chr4 (73-146)||(47031455-47031528)
chr4 (66-119)||(15531234-15531287)
[»] chr3 (9 HSPs)
chr3 (52-174)||(31658787-31658910)
chr3 (66-167)||(5232946-5233047)
chr3 (66-167)||(20104322-20104423)
chr3 (66-155)||(39833218-39833307)
chr3 (52-143)||(50650391-50650482)
chr3 (52-164)||(12938528-12938640)
chr3 (66-137)||(36950163-36950234)
chr3 (66-119)||(29703559-29703612)
chr3 (66-119)||(53282294-53282347)
[»] chr2 (10 HSPs)
chr2 (53-174)||(18977078-18977200)
chr2 (66-167)||(37078947-37079048)
chr2 (66-164)||(15330735-15330833)
chr2 (66-164)||(37261675-37261773)
chr2 (66-164)||(14810093-14810191)
chr2 (66-164)||(16429864-16429962)
chr2 (66-164)||(17690604-17690702)
chr2 (66-137)||(33755075-33755146)
chr2 (52-143)||(14096383-14096474)
chr2 (66-119)||(7089225-7089278)
[»] chr7 (8 HSPs)
chr7 (66-167)||(47327942-47328043)
chr7 (66-164)||(45972423-45972521)
chr7 (66-150)||(29243380-29243462)
chr7 (52-143)||(19436799-19436890)
chr7 (73-146)||(6442633-6442706)
chr7 (77-146)||(34094118-34094187)
chr7 (52-139)||(29833948-29834035)
chr7 (52-100)||(29258513-29258562)
[»] chr1 (6 HSPs)
chr1 (66-164)||(12981521-12981619)
chr1 (66-164)||(45348246-45348344)
chr1 (52-163)||(39241685-39241793)
chr1 (52-143)||(27286291-27286382)
chr1 (52-143)||(52385813-52385904)
chr1 (73-142)||(45325635-45325704)
[»] scaffold0166 (1 HSPs)
scaffold0166 (66-164)||(30685-30783)
[»] chr8 (4 HSPs)
chr8 (66-164)||(531684-531782)
chr8 (66-150)||(30945445-30945527)
chr8 (66-137)||(3879472-3879543)
chr8 (52-140)||(13802682-13802770)
[»] chr5 (7 HSPs)
chr5 (66-164)||(24788302-24788400)
chr5 (52-164)||(1828539-1828651)
chr5 (52-164)||(40314004-40314116)
chr5 (52-143)||(41413442-41413533)
chr5 (52-143)||(30624991-30625082)
chr5 (66-119)||(39884696-39884749)
chr5 (52-140)||(31482071-31482159)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 28138126 - 28138008
Alignment:
Q  56 catggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138126 catggacaagtttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 28138027  T
Q  156 cgctctccttttatttccc 174  Q
    |||||||||||||||||||    
T  28138026 cgctctccttttatttccc 28138008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 12938769 - 12938860
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| |||||||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  12938769 ccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 12938860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 33694915 - 33694998
Alignment:
Q  60 gacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||| ||||||||||||||||||  |||||||||| |||| || ||||||||||||||||  | |||||| ||||||||||||    
T  33694915 gacaaatttatttcatgatcttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttctt 33694998  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 42976457 - 42976602
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| |    
T  42976457 ccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatc 42976556  T
Q  152 aattcgctctcct-tttatttcccnnnnnnnatttatccatattct 196  Q
    ||||| ||||||| ||||||||||       |||||||||||||||    
T  42976557 aattctctctcctctttatttccctttctttatttatccatattct 42976602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 20133410 - 20133499
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 155  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 20133499  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 55919463 - 55919365
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 55919365  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 27293073 - 27293164
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27293073 ccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27293164  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 28679508 - 28679606
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||| ||||||||||  |||| ||||||||| ||| ||| |||||||||||   |||||||||||||||||||||||||||||||||  |||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcct 28679606  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 45989679 - 45989606
Alignment:
Q  73 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 146  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 45989606  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 4919141 - 4919232
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  4919141 ccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 4919232  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 42069115 - 42069042
Alignment:
Q  73 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 146  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 42069042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 47031528 - 47031455
Alignment:
Q  73 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 146  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 47031455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 15531287 - 15531234
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 119  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T

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Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 31658910 - 31658787
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| || |    
T  31658910 ccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatc 31658811  T
Q  152 aattcgctctcct-tttatttccc 174  Q
    ||||| ||||||| ||||||||||    
T  31658810 aattctctctcctctttatttccc 31658787  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 5232946 - 5233047
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 165  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  166 tt 167  Q
    ||    
T  5233046 tt 5233047  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 20104322 - 20104423
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 165  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcctt 20104421  T
Q  166 tt 167  Q
    ||    
T  20104422 tt 20104423  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 39833307 - 39833218
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 155  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 39833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 50650482 - 50650391
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  50650482 ccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 50650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 12938528 - 12938640
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | ||    
T  12938528 ccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattcc 12938627  T
Q  152 aattcgctctcct 164  Q
    || || |||||||    
T  12938628 aaatctctctcct 12938640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 137  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 29703612 - 29703559
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 119  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 53282294 - 53282347
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 119  Q
    |||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T

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Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 18977200 - 18977078
Alignment:
Q  53 caccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacca 152  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||  ||||||||||| | ||||||||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  153 attcgctctcct-tttatttccc 174  Q
    |||  ||||||| ||||||||||    
T  18977100 attatctctcctctttatttccc 18977078  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 37078947 - 37079048
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 165  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  166 tt 167  Q
    ||    
T  37079047 tt 37079048  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 15330735 - 15330833
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 15330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 37261773 - 37261675
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 37261675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 14810191 - 14810093
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 14810093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 16429864 - 16429962
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcct 16429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 17690604 - 17690702
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 17690702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 137  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 14096383 - 14096474
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| ||||||||  |||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  14096383 ccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 14096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 119  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 47327942 - 47328043
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 165  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  166 tt 167  Q
    ||    
T  47328042 tt 47328043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 45972423 - 45972521
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45972521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 29243380 - 29243462
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 150  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 29243462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 19436799 - 19436890
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| ||||||||  |||||||||  ||||||| ||| ||||||||||||  | | |||||||||||||||||    
T  19436799 ccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttctt 19436890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 6442633 - 6442706
Alignment:
Q  73 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 146  Q
    |||||||||||  |||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 6442706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 34094118 - 34094187
Alignment:
Q  77 atcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 146  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 34094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 29834035 - 29833948
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttt 139  Q
    ||||||| ||||||||||||||| ||||||||  |||||||||  ||||||| ||| |||||||||||   | ||| |||||||||||    
T  29834035 ccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatttt 29833948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 29258513 - 29258562
Alignment:
Q  52 ccaccatggacaagtttatttcatgatc-ttaaaggttagatttacttgg 100  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||||||||    
T  29258513 ccaccgtggacaagtttatttcataatctttaacggttagatttacttgg 29258562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 12981521 - 12981619
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 12981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 45348344 - 45348246
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 39241685 - 39241793
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||   | | | ||||||||||||  |||||||||||||||||||||||| |  |    
T  39241685 ccaccatagacaagtttatttcatgatcttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttcttctaattac 39241781  T
Q  152 aattcgctctcc 163  Q
    ||||| ||||||    
T  39241782 aattctctctcc 39241793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 27286291 - 27286382
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| |||||||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27286291 ccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 52385904 - 52385813
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| ||||||||||||||| |||||| | ||||||||||  ||| ||| ||| ||||||||||||  | |||||||||||||||||||    
T  52385904 ccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttctt 52385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 45325704 - 45325635
Alignment:
Q  73 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttct 142  Q
    ||||||||||| ||||||||||| || |||| ||| |||||||||||   ||||||||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 30783 - 30685
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 30685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 531684 - 531782
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    |||||||||| || |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 30945527 - 30945445
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 150  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 30945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 137  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 13802770 - 13802682
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 140  Q
    ||||||| ||||  |||| || |||||||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  13802770 ccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 24788400 - 24788302
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 164  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 24788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 1828539 - 1828651
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | ||    
T  1828539 ccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattcc 1828638  T
Q  152 aattcgctctcct 164  Q
    || || |||||||    
T  1828639 aaatctctctcct 1828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 40314004 - 40314116
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacc 151  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | ||    
T  40314004 ccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattcc 40314103  T
Q  152 aattcgctctcct 164  Q
    || || |||||||    
T  40314104 aaatctctctcct 40314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 41413533 - 41413442
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||||| | ||| ||||||||||||  | | |||||||||||||||||    
T  41413533 ccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttctt 41413442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 30624991 - 30625082
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 143  Q
    ||||||| |||||||||||||||  || |||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  30624991 ccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 30625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 39884696 - 39884749
Alignment:
Q  66 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 119  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 31482159 - 31482071
Alignment:
Q  52 ccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 140  Q
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T  31482159 ccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

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