View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5813-Insertion-1 (Length: 905)
Name: NF5813-Insertion-1
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5813-Insertion-1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 756; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 8 - 876
Target Start/End: Original strand, 31029219 - 31030074
Alignment:
| Q |
8 |
aaatagatgatgagtttgacgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagt |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029219 |
aaatagatgatgagtttgatgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagt |
31029318 |
T |
|
| Q |
108 |
tgttcaaatgttagagggtctttgtactgttcctaaaccaccaaaatcctccaatgaaggagatacctcttctgatgcttatctatcagcagttagtctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029319 |
tgttcaaatgttagagggtctttgtactgttcctaaaccaccaaagtcctccaatgaaggagatacctcttctgatgcttatctatcagcagttagtctt |
31029418 |
T |
|
| Q |
208 |
tcaggtccaagatagcaataatagctctatgtatcttcttttttggacttaaatgaacttttggtccctctatatttattgattcacaattttattccct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029419 |
tcaggtccaagatagcaataatagctctatgtatcttcttttttggacttaaatgaacttttggtccctctatatttattgattcacaattttattccct |
31029518 |
T |
|
| Q |
308 |
atttttaaaaatccaaaatacagtcccttagtttttaaaatatcatactttttcactaccactaaatttggggtatatatatgttgattaatgcaggacg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31029519 |
atttttaaaaatccaaaatacagtcccttagtttttaaaatatcatactttttcactaccactaaatttggggtatatatatgttgattaatgcaggaca |
31029618 |
T |
|
| Q |
408 |
gagaaagaattatgatggtaactcttcnnnnnnnnnnnnnnnnnnnnnccgacagaatgatggtaacycttctagtaaaataaatggtaatgtcttggag |
507 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31029619 |
gagaaagaattatgatggtaactcttc--------------tttttttccgacagaatgatggtaactcttctagtaaaataaatggtaatgtcttggag |
31029704 |
T |
|
| Q |
508 |
gaaactagagtatatagtttaaagttgctacgtatttctagaccattttaataacagaagttaaacaaaagtctatacaattctcttaaaacatcgt-aa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31029705 |
aaaactagagtatatagtttaaagttgctacgtatttctagaccattctaataacagaagttaaacaaaagtctatacaattctcttaaaacatcgtaaa |
31029804 |
T |
|
| Q |
607 |
gcatctataaatagataagcatatgcggaattgtattcaaacatgtgagatgtaatgtcaatgacattgatggtttcatcataccatatctctactccta |
706 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31029805 |
gcatctataaatagataagcatctgcggaattgtattcaaacatgtgagatgtaatgtcaatgacattgatggtttcatcataccatatctctactccca |
31029904 |
T |
|
| Q |
707 |
attgctattgtaaagtaccgccaaggcagggttgccctgacggtgtatgcttaagacttaggagtgtactcctctttagttcttgtgtttgaatcctcca |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31029905 |
attgctattgtaaagtaccgccaaggcagggttgccctgacggtgtatgcttaagacttaggagtgtactcctctttagttctcgtgtttgaatcctcca |
31030004 |
T |
|
| Q |
807 |
tgtgccaacaattaatgtgttggggaagtccatataggactatggataattgtgccttaaaatcagttgt |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31030005 |
tgtgccaacaattaatgtgttggggaagtccatataggactacggataattgtgccttaaaatcagttgt |
31030074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 33800289 - 33800050
Alignment:
| Q |
8 |
aaatagatgatgagtttgacgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagt |
107 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33800289 |
aaatagatgatgagaatgatgatagggttcattgtgctataaatgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagt |
33800190 |
T |
|
| Q |
108 |
tgttcaaatgttagagggtctttgtactgttcctaaaccaccaaaatcctccaatgaaggagatacc------tcttctgatgcttatctatcagcagtt |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
33800189 |
tgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaaaacctcctcttcttctgatgcttatctatcagcggtt |
33800090 |
T |
|
| Q |
202 |
agtctttcaggtccaagatagcaataatagctctatgtat |
241 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33800089 |
agtctttcaggaccaagatagcaataatagctctatgtat |
33800050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 33813551 - 33813790
Alignment:
| Q |
8 |
aaatagatgatgagtttgacgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagt |
107 |
Q |
| |
|
|||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33813551 |
aaatagatgatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagt |
33813650 |
T |
|
| Q |
108 |
tgttcaaatgttagagggtctttgtactgttcctaaaccaccaaaatcctccaatgaaggagatacc------tcttctgatgcttatctatcagcagtt |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
33813651 |
tgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaacacctcctcttcttctgatgcttatctatcagcagtt |
33813750 |
T |
|
| Q |
202 |
agtctttcaggtccaagatagcaataatagctctatgtat |
241 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
33813751 |
ggtctttctggcccaagatagcaataatagctctatgtat |
33813790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 33804753 - 33804593
Alignment:
| Q |
8 |
aaatagatgatgagtttgacgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagt |
107 |
Q |
| |
|
|||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33804753 |
aaatagatgatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagt |
33804654 |
T |
|
| Q |
108 |
tgttcaaatgttagagggtctttgtactgttcctaaaccaccaaaatcctccaatgaagga |
168 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33804653 |
tgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaagga |
33804593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 6351509 - 6351381
Alignment:
| Q |
81 |
gtctatgagaccttccatgacagaagttgttcaaatgttagagggtctttgtactgttcctaaaccaccaaaatcctccaatgaaggaga---tacctct |
177 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||| | ||||| |
|
|
| T |
6351509 |
gtctttgagaccttccaggacaaaagttgttcaaatgttagagggtatttgcactgttccataaccaccaaaatcttccaatgaaggatacccctcctct |
6351410 |
T |
|
| Q |
178 |
tctgatgcttatctatcagcagttagtct |
206 |
Q |
| |
|
| |||||||||||||||||||||| |||| |
|
|
| T |
6351409 |
tgtgatgcttatctatcagcagtttgtct |
6351381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 609 - 674
Target Start/End: Complemental strand, 33798909 - 33798844
Alignment:
| Q |
609 |
atctataaatagataagcatatgcggaattgtattcaaacatgtgagatgtaatgtcaatgacatt |
674 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||||||||| |||||| ||||| |
|
|
| T |
33798909 |
atctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaacgtcaataacatt |
33798844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 33799968 - 33799915
Alignment:
| Q |
323 |
aaatacagtcccttagtttttaaaatatcatactttttcactaccactaaatttg |
377 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||| |
|
|
| T |
33799968 |
aaatatagtcccttagttttt-aaatatcataatttttccctaccactcaatttg |
33799915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 49464214 - 49464350
Alignment:
| Q |
15 |
tgatgagtttgacgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagttgttcaa |
114 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
49464214 |
tgatgagcatgatgatagggttcaatgtgctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaa |
49464313 |
T |
|
| Q |
115 |
atgttagagggtctttgtactgttcctaaaccaccaa |
151 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
49464314 |
atgttggagggtctctgcactgttcctaaaccaccaa |
49464350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 34526029 - 34526083
Alignment:
| Q |
247 |
tttttggacttaaatgaacttttggtccctctatatttattgattcacaatttta |
301 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || ||| |||||| ||||||||| |
|
|
| T |
34526029 |
tttttagacttaaatgcacttttggtccctccatttttgttgatttacaatttta |
34526083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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