View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813-Insertion-10 (Length: 256)

Name: NF5813-Insertion-10
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813-Insertion-10
NF5813-Insertion-10
[»] chr8 (3 HSPs)
chr8 (31-256)||(41805499-41805724)
chr8 (48-256)||(41799113-41799321)
chr8 (50-256)||(41812329-41812535)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 256
Target Start/End: Complemental strand, 41805724 - 41805499
Alignment:
Q  31 tatagatgggttcacattgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaa 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805724 tatagatgggttcacactgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaa 41805625  T
Q  131 gctgcctgatggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41805624 gctgcctgatggcctccctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactctcttcttaagttc 41805525  T
Q  231 aacaacaattgttgtcacattcatct 256  Q
    ||||||||||||||||||||||||||    
T  41805524 aacaacaattgttgtcacattcatct 41805499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 41799321 - 41799113
Alignment:
Q  48 tgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctcc 147  Q
    |||||||||||||| ||| ||||||||||||| |||||| |||  |||| | | ||| | |||||||||||||| |||||| ||||||||||||||||||    
T  41799321 tgctctctggcccctgcgtgtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctcc 41799222  T
Q  148 ctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtca 247  Q
    ||||||||||||||||| | ||| || || ||||||||||||| |||| |||||||||||||| |||||  ||||||||||||||||||| ||| |||||    
T  41799221 ctcttttcctctcccaaatccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtca 41799122  T
Q  248 cattcatct 256  Q
    |||||||||    
T  41799121 cattcatct 41799113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 41812535 - 41812329
Alignment:
Q  50 ctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccct 149  Q
    ||||||||||||   |||||||||| |||| | |||| |||||| |||| | ||| | |||||||||||||  |||||| ||||||||||||||||||||    
T  41812535 ctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgcctgatggcctccct 41812436  T
Q  150 cttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtcaca 249  Q
    ||||||||||||||| | ||| || || |||||||||||||  |||||||||| |||||||||||||  ||||||||||||| ||||| ||| |||||||    
T  41812435 cttttcctctcccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcaca 41812336  T
Q  250 ttcatct 256  Q
    |||||||    
T  41812335 ttcatct 41812329  T

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