View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5813-Insertion-12 (Length: 177)

Name: NF5813-Insertion-12
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5813-Insertion-12
NF5813-Insertion-12
[»] chr6 (3 HSPs)
chr6 (9-174)||(24105015-24105180)
chr6 (22-58)||(24105739-24105775)
chr6 (107-150)||(34879469-34879512)
[»] chr7 (2 HSPs)
chr7 (105-143)||(38957343-38957381)
chr7 (105-142)||(10926633-10926670)
[»] chr2 (1 HSPs)
chr2 (103-143)||(32102859-32102899)
[»] chr8 (1 HSPs)
chr8 (116-143)||(29096966-29096993)
[»] chr4 (1 HSPs)
chr4 (104-143)||(12710023-12710062)
[»] chr3 (1 HSPs)
chr3 (104-143)||(28525028-28525067)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 2e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 24105015 - 24105180
Alignment:
Q  9 tttatgatatgaatgttggagttgaaaatgatgataaattgttggagtagttgtggttgatagctctctagcaacgcatgtgtctgcgactaatatgaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24105015 tttatgatatgaatgttggagttgaaaatgatgataaattgttggagtagttgtggttgatagctctctagcaacgcatgtgtctgcgactaatatgaca 24105114  T
Q  109 ctgagatatgtgattacattcaattaatttattttaaaaattttcacatataagagtgtcacgtcc 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  24105115 ctgagatatgtgattacattcaattaatttatttttaaaattttcacatataagagtttcacgtcc 24105180  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 24105739 - 24105775
Alignment:
Q  22 tgttggagttgaaaatgatgataaattgttggagtag 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  24105739 tgttggagttgaaaatgatgataaattgttggagtag 24105775  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 34879469 - 34879512
Alignment:
Q  107 cactgagatatgtgattacattcaattaatttattttaaaaatt 150  Q
    |||||| | |||||||||||||||||||||| ||||| ||||||    
T  34879469 cactgacacatgtgattacattcaattaattgatttttaaaatt 34879512  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 38957343 - 38957381
Alignment:
Q  105 gacactgagatatgtgattacattcaattaatttatttt 143  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  38957343 gacactgacacatgtgattacattcaattaatttatttt 38957381  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 10926633 - 10926670
Alignment:
Q  105 gacactgagatatgtgattacattcaattaatttattt 142  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  10926633 gacactgagatatgtgattacatttaattaattcattt 10926670  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 32102859 - 32102899
Alignment:
Q  103 atgacactgagatatgtgattacattcaattaatttatttt 143  Q
    |||||||||| | ||||||||| ||||||||||||||||||    
T  32102859 atgacactgacaaatgtgattatattcaattaatttatttt 32102899  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 143
Target Start/End: Complemental strand, 29096993 - 29096966
Alignment:
Q  116 atgtgattacattcaattaatttatttt 143  Q
    ||||||||||||||||||||||||||||    
T  29096993 atgtgattacattcaattaatttatttt 29096966  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 12710062 - 12710023
Alignment:
Q  104 tgacactgagatatgtgattacattcaattaatttatttt 143  Q
    ||||||||| ||||||| |||| |||||||||||||||||    
T  12710062 tgacactgatatatgtgtttacgttcaattaatttatttt 12710023  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 28525067 - 28525028
Alignment:
Q  104 tgacactgagatatgtgattacattcaattaatttatttt 143  Q
    ||||||||| | |||||||||||||||||||||| |||||    
T  28525067 tgacactgacacatgtgattacattcaattaattcatttt 28525028  T

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